Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01540 ATGGCAAAGCCAGGGGTGTTGGACTCTGATCCAGAGGTGATGGTGAAGAAGACCATTGAGTTGAAGAAGGAGCTTCAGAGGTTGATGAAGTCCATTGTTGATGATGAGGATTGTAGCACTGAAGCCATTGATCAAGCCAAGGAGACTCTCTGTGTTCTCAAGGAGTTGAAGATGAGAAGGAGGTCTTCACTGTCTTTGAAGCTTCAGAAGACTGTGACATGCCCAGATGAATTCAAGTGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTTATTCAAAAATGGCTGAATGCTGGAAATAGGACTTGCCCTCGAACCAATCAAGTCCTCTCACACACTTTCCTTACTCCAAATCACCTAATAAGGGAAATGATAGAACAATGGTCTAAAAACCAAGGGATGGAAGTGTCCAATACTGTTCACTATATCAACGAGGAAGGCATGAAAGAAGCTGACCGTGACCATTTTCTTTGTTTGCTCAAGAAAATGTCTTCAACACTATCTGATCAGAAATCAGCTGCAAAAGAACTCCGCTTGTTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTTTGTGATTCTGTAGATGCCATTCCTCAATTGCTTAAGCCAATTTGTGTGAGTGATTCTTTCAGTACTATTCACCCTGATCTCCAAGAAGATGTAATCACAACACTGCTCAATATCTCAATCCATGACAACAACAAGAAACTAGTAGCGGAAACTCCAATGGTAATTCCACTCCTTATGAAAGCATTGAGATCAGGAACAATTCAAACAAGAAGCAATGCTGCAGCGGCCCTTTTCACTTTGTCAGCTCTTGACTCAAACAAGGAACTCATAGGAAAATCTGATGCCTTAAAGCCATTAATTGACCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTACTTTATGCGTCTTACATGAGAACAAGGCAAGAGCAGTGAAGGATGGCGCAGTGAGGGTGATTTTGACAAAGATAAAAAACCGGGTTCGTGTTGATGAATTACTAGCTATCCTTGCACTGCTTTCAACTCACCAGAGGGCTATTCATGACATGGGAGATCTTGGAGCTGTTCCAAGCTTGCTAAGCATTATCAGAGAGAGCTCTTGCGAACGCAACAAGGAGAATTGTATAGCAATCCTTCAAACTATCTGCCTGTATGATAGATCCAAGTTGAAGGAAATGAAGGAAGAGGAGAACACTCATAGAACAATATCTGAACTTGCACAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCATAA 1377 0.4198 MAKPGVLDSDPEVMVKKTIELKKELQRLMKSIVDDEDCSTEAIDQAKETLCVLKELKMRRRSSLSLKLQKTVTCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTNQVLSHTFLTPNHLIREMIEQWSKNQGMEVSNTVHYINEEGMKEADRDHFLCLLKKMSSTLSDQKSAAKELRLLTKKHPCFRVLFCDSVDAIPQLLKPICVSDSFSTIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMKALRSGTIQTRSNAAAALFTLSALDSNKELIGKSDALKPLIDLLEEGHPLAMKDVASAIFTLCVLHENKARAVKDGAVRVILTKIKNRVRVDELLAILALLSTHQRAIHDMGDLGAVPSLLSIIRESSCERNKENCIAILQTICLYDRSKLKEMKEEENTHRTISELAQNGTSRAKRKASGILERLNRVVNITHTA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01540 458 PANTHER U BOX DOMAIN-CONTAINING 19 448 - -
Rops8g01540 458 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Rops8g01540 458 SUPERFAMILY ARM repeat 169 448 IPR016024 -
Rops8g01540 458 CDD RING-Ubox_PUB 75 127 IPR045210 -
Rops8g01540 458 Gene3D - 351 453 IPR011989 -
Rops8g01540 458 SMART arm_5 366 407 IPR000225 GO:0005515
Rops8g01540 458 SMART arm_5 244 285 IPR000225 GO:0005515
Rops8g01540 458 SMART arm_5 286 326 IPR000225 GO:0005515
Rops8g01540 458 SMART arm_5 194 243 IPR000225 GO:0005515
Rops8g01540 458 SUPERFAMILY RING/U-box 72 148 - -
Rops8g01540 458 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Rops8g01540 458 Gene3D - 206 350 IPR011989 -
Rops8g01540 458 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Rops8g01540 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 157 IPR013083 -
Rops8g01540 458 FunFam RING-type E3 ubiquitin transferase 158 454 - -
Rops8g01540 458 Pfam U-box domain 75 144 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01540 Rops-Chr8 34663204 34666342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01540 136 458 U-box Gene Family AT3G07360 62.121 3.03e-132 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01540 - - gmx:100777031 798.119