Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01515 ATGAAGTTCAATATTGCGAATCCTACCACTGGATGTCAGAAGAAGCTGGAGATCGACGATGATCTGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAAGTCATTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGTCTCTTGCTTCACAGGGGCACTCCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTACCTGGCCTGACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATACCGTCGGACATTTACAACAAAAGCTGGAAAAAAGGTGAGCAAAGCTCCGAAGATACAACGATTGGTCACTCCTCTCACACTTCAAAGAAAGCGTGCAAGGATCGCTGACAAGAAGAAGAGAATCACCAAGGCAAAATCAGAAGCAGCCGAGTACCAGAAGCTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAGCGTCGTAGTGAGAGTTTGGCAAAGAGGAGATCCAAGATCTCCAGTGCTGCTACTAAGCCAGCTGTCACTGCATAG 753 0.4768 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVIGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRITKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSAATKPAVTA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01515 250 Coils Coil 189 216 - -
Rops8g01515 250 Gene3D - 133 234 - -
Rops8g01515 250 MobiDBLite consensus disorder prediction 220 235 - -
Rops8g01515 250 PIRSF RPS6e 1 250 IPR014401 GO:0003735|GO:0005840|GO:0006412
Rops8g01515 250 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Rops8g01515 250 MobiDBLite consensus disorder prediction 236 250 - -
Rops8g01515 250 MobiDBLite consensus disorder prediction 220 250 - -
Rops8g01515 250 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Rops8g01515 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 240 IPR001377 GO:0003735|GO:0005840|GO:0006412
Rops8g01515 250 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01515 Rops-Chr8 34185185 34188440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01515 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 70.683 9.44e-119 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01515 K02991 - gmx:100786559 448.743