Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01504 ATGGTTAGGCAGGAAAAGAAGAAGATGAAGAATGGGTCTATTGGGTCCATTTTCATGCATGCTGATGGGCAAGATTGGTTTCTTATGGTTTTAGGTACCTTTGGGGCAATTGGTGAAGGCTTGACTACCCCTTTGGTGTTGTATATCAGTAGTCGCATGATGAATAATATTGGAAGTTCGTCTACCATGGCAGTAAACACTTTCATCCACAAAATCAATGAGAATGCAGTGGCTTGGTTATATTTGGCTGGTGTGTCTTTTGTTGTTTGCTTCCTCGAGGGTTATTGTTGGACCAGAACAAGTGGAAGACAAGCGGCGAGAATGAGATGTAGGTATCTGAAAGCAGTTCTCAGACAAGAAGTGGCTTACTTTGATTTGCATGTCACAAGTACTTCAGAGATCATCACTAGTGTTTCCAATGACAGCCTCGTGATTCAAGATGTTCTTAGTGAGAAGGTTCCAAATTTCTTGGTGAACCTTTCTATGTTCGTTGGGAGCTACATAGCGGCTTTTGCAATGTTGTGGAGATTGGCCATTGTGGCGTTTCCTTTTGTGGTTCTTCTGGTGATCCCTGGTTTAATTTATGGCAAGAGTTTGATAAGACTTGCTAGCAAGATCAGAGAAGAGTATAATCAAGCTGGTTCAGTAGCAGAACAAACAATATCTTCCATCCGAACCGTCTATTCATTTGTGGGAGAAAGCAAGTCCATGAATGCTTTCTCTGATGCTCTTCAAGGGACAATTAAGTTGGGCCTAAAACAAGGCTTAGCTAAAGGATTAGCCATTGGAAGCAACGGTGTTGTCTTTGCCATATGGTCCTTCATTTGCTATTATGGTAGCAGACTTGTTATGTACCATGGTGCCAAAGGAGGGACAGTTTTCGCGGTTGGAGCAACCATAACTGTTGGTGGATTAGCATTAGGTGCTGGTTTATCCAACTTGAAGTACTTCTCTGAAGCATGTTCAGCTGGGGAACGTATCAAGGGAATGATAAAAAGAGTTCCAAAGATTGATTCTGAGAACATGGATGGCGAGATTTTGGATAAAGTTTCTGGGGAAGTGGAATTTGACCACATTGAATTTGCATACCCATCAAGGCCAGATAGCATTATCCTGAATGACTTGTGCCTCAAGATCCCAGCAGGGAAGACAGTGGCCTTGGTGGGTGAGAGTGGCTCAGGAAAATCCACAGTGATATCACTTTTGCAGAGATTTTATGACCCAGTTGGGGGTGAGATACTACTTGATGGGGTGGCTATTCATAAGTTGCAGGTCAAGTGGCTAAGGTCACTGATGGGGTTGGTGAGCCAAGAGCCTGCTCTGTTTGCTACCAGCATTAAAGAGAACATACTTTTTGGGAAGGAGGATGCTACAGAGGATGAGATAGTTGAGGCTGCAAAAACTTGCAATGCTCATAATTTCATTTCTCAGCTGCCTCAGGGTTACCATACGCAGGTGGGGGAGAGAGGGATTCAAATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCACGGGCAATAATTAAGAAACCGCGAATCCTTCTACTGGATGAAGCAACCAGCGCGCTAGACTCCGAATCCGAACGACTCGTCCAAGCAGCACTCGACAATGCAGCCACCGGTTGCACCACCATCATCATCGCTCACCGCCTATCCACCATTCAAAACGCCGATATCGTCGCCGTCATGCGCGGCGGAAAGATCACAGAAATGGGCTCACACGACGACCTCATACAAAACGACAACGGCCTCTACACCTCCCTCATGCGCCTGCAACAAACAGAGGAAACCGTTACAACTGTCCCTTCTTCCATATCAATCACCGACAACACTCAAAACATGGACCCAGTGGAGCCTTTGAATTTGGTTGGCGATGATGAAGTCATTGAACAAGAGAAGAAGAAGCCAGAGATTCGTACGGCGTCGTTTTGGAGACTGCTGGCAATGAATCTTCCAGAATGGAAGCATGCGGTTTTAGGGTGTTTGAATGCGATGGTGTCGGGTGCTGTTCAGCCTGTTTATGCATTCGCGATGGGGTCCATGATATTCGTGTATTTTCACACGGATCATGAAGAGATAAAAGAGAAGAGTAGAGTCTATTCGCTTTGGTTCTTGTGCCTCTCGTTAGTCTCTTTGTTGGTTAATGTGGGCCAGCATTATAGCTTTGCTTACATGGGAGAGTACTTGACCAAACGGGTTAGAGAGAGCATGCTTTCCAAGATACTCACTTTTGAAGTTGGGTGGTTTGATCAGGGTGAAAATTCCACTGGTGCTGTTTGTTCAAGACTTGCCAACGATGCTAATGTGGTGAGGTCTTTAGTGGGAGATAGAATGGCTCTGTTGGTACAAACTTTCTCAGCAGTAATAACAGCATACACTATGGGTCTGGTAATTTCTTGGAGGCTAACTATTGTTATGATAGCCGTTCAACCCATTATCATAGCATGCTTTTACACAAGACGTGTCCTTCTCAAGAGCATGTCCAAAAAAGCCATCAAGTCCCAAGAACAAAGCAGCAAGCTATCTGCTGAAGCTGTTTCAAACTTTAGAACCATCACTGCTTTCTCTTCACAAGAAAGAATGATCAAAATGCTTGAAACAGCCCAAGAAGGCCCAATTCATGAGAATATTAGACAATCTTGGTTTGCTGGCATTGCACTTGGGTGCTCACAATTTCTCACTTCTTGTAGTTGGGCCTTGGACTTTTGGTATGGTGGCAAGCTTTTCTCAGATGGGTACATCACAACAAAAGCATTTTTTGAAAGCTTCATGGTTGTAGTGAGCACAGGAAGGGTCATTGCAGATGCTGGAAGCATGACCAAAGATCTTAGCAAAGGTGCAGATGTTGTGGGCTCAATTTTTGCCATCTTGGATCGGTGCACAATAACGGAGCATGATGACCCAAATGGGTACAAGCCTGAGAATCTAATGGGCCAAATAGAACTTTGTGATGTGCATTTTGCATACCCAGCTAGGCCCAGTGTATTTATCTTCCAAGCCTTCTCAATTAAAATTGAAGCAGGGAAATCAACAGCATTGGTGGGGCAAAGTGGGTCCGGCAAATCAACCATCATAGGATTAATAGAGAGATTTTATGACCCACTTAAAGGAACAGTGACAATAGATGGTAGAGACATAAAATCATATAACCTTAAGTCACTAAGAAAGCACATGGCACTTGTGAGTCAAGAGCCAACATTGTTTAATGGGACCATAAGAGAGAACATAGAATATGGAAAAATTGGCAATATTGATGAGGCTGAGATCATAGAGGCAGCAAGGGTAGCCAATGCTCATGATTTCATAGCTAGTATGAAGGATGGATATGAGACATGGTGTGGGGACAAAGGGGTGCAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCAAGGGCCATATTGAAGGATCCGAAGGTGTTGCTGCTAGATGAGGCCACAAGCGCACTAGATAGCCATTCAGAGAGGGTGGTGCAAGATGCATTGGGGAGGGTGATGGTGGGAAGGACCAGTGTGGTTGTGGCACATAGGTTGAGCACCATACAAAATTGTGATCTTATTGCAGTGTTAGATAAAGGGAAGGTGGTGGAGATTGGAACCCACTCATCTTTATTGGTTAAAGGACCATGTGGAGCTTATTACTCTTTGGTGAGTCTTCAAACTAGACATGCAGCCTCACCCAATAACTCTTCTACTAAAGACACACAATCTATCAACTAA 3720 0.4422 MVRQEKKKMKNGSIGSIFMHADGQDWFLMVLGTFGAIGEGLTTPLVLYISSRMMNNIGSSSTMAVNTFIHKINENAVAWLYLAGVSFVVCFLEGYCWTRTSGRQAARMRCRYLKAVLRQEVAYFDLHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLVNLSMFVGSYIAAFAMLWRLAIVAFPFVVLLVIPGLIYGKSLIRLASKIREEYNQAGSVAEQTISSIRTVYSFVGESKSMNAFSDALQGTIKLGLKQGLAKGLAIGSNGVVFAIWSFICYYGSRLVMYHGAKGGTVFAVGATITVGGLALGAGLSNLKYFSEACSAGERIKGMIKRVPKIDSENMDGEILDKVSGEVEFDHIEFAYPSRPDSIILNDLCLKIPAGKTVALVGESGSGKSTVISLLQRFYDPVGGEILLDGVAIHKLQVKWLRSLMGLVSQEPALFATSIKENILFGKEDATEDEIVEAAKTCNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQAALDNAATGCTTIIIAHRLSTIQNADIVAVMRGGKITEMGSHDDLIQNDNGLYTSLMRLQQTEETVTTVPSSISITDNTQNMDPVEPLNLVGDDEVIEQEKKKPEIRTASFWRLLAMNLPEWKHAVLGCLNAMVSGAVQPVYAFAMGSMIFVYFHTDHEEIKEKSRVYSLWFLCLSLVSLLVNVGQHYSFAYMGEYLTKRVRESMLSKILTFEVGWFDQGENSTGAVCSRLANDANVVRSLVGDRMALLVQTFSAVITAYTMGLVISWRLTIVMIAVQPIIIACFYTRRVLLKSMSKKAIKSQEQSSKLSAEAVSNFRTITAFSSQERMIKMLETAQEGPIHENIRQSWFAGIALGCSQFLTSCSWALDFWYGGKLFSDGYITTKAFFESFMVVVSTGRVIADAGSMTKDLSKGADVVGSIFAILDRCTITEHDDPNGYKPENLMGQIELCDVHFAYPARPSVFIFQAFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYNLKSLRKHMALVSQEPTLFNGTIRENIEYGKIGNIDEAEIIEAARVANAHDFIASMKDGYETWCGDKGVQLSGGQKQRIAIARAILKDPKVLLLDEATSALDSHSERVVQDALGRVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEIGTHSSLLVKGPCGAYYSLVSLQTRHAASPNNSSTKDTQSIN* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01504 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
Rops8g01504 1239 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524|GO:0016887
Rops8g01504 1239 SUPERFAMILY ABC transporter transmembrane region 23 338 IPR036640 GO:0005524|GO:0016020
Rops8g01504 1239 Pfam ABC transporter 372 521 IPR003439 GO:0005524
Rops8g01504 1239 Gene3D - 970 1230 IPR027417 -
Rops8g01504 1239 CDD ABC_6TM_Pgp_ABCB1_D1_like 29 327 - -
Rops8g01504 1239 Gene3D ABC transporter type 1, transmembrane domain 17 892 IPR036640 GO:0005524|GO:0016020
Rops8g01504 1239 CDD ABC_6TM_Pgp_ABCB1_D2_like 647 959 - -
Rops8g01504 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 969 1220 IPR027417 -
Rops8g01504 1239 Gene3D - 344 593 IPR027417 -
Rops8g01504 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 664 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g01504 1239 SMART AAA_5 1007 1180 IPR003593 GO:0016887
Rops8g01504 1239 SMART AAA_5 381 575 IPR003593 GO:0016887
Rops8g01504 1239 FunFam ABC transporter B family member 4 344 598 - -
Rops8g01504 1239 CDD ABC_MTABC3_MDL1_MDL2 980 1220 - -
Rops8g01504 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 592 IPR027417 -
Rops8g01504 1239 FunFam ABC transporter B family member 4 970 1228 - -
Rops8g01504 1239 SUPERFAMILY ABC transporter transmembrane region 645 959 IPR036640 GO:0005524|GO:0016020
Rops8g01504 1239 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Rops8g01504 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1217 IPR003439 GO:0005524
Rops8g01504 1239 Pfam ABC transporter 1000 1148 IPR003439 GO:0005524
Rops8g01504 1239 FunFam Putative ABC transporter B family member 8 623 968 - -
Rops8g01504 1239 ProSitePatterns ABC transporters family signature. 1120 1134 IPR017871 GO:0005524|GO:0016887
Rops8g01504 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 30 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g01504 1239 FunFam ABC transporter B family member 1 16 353 - -
Rops8g01504 1239 Pfam ABC transporter transmembrane region 659 928 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g01504 1239 Pfam ABC transporter transmembrane region 29 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g01504 1239 PANTHER ABC TRANSPORTER B FAMILY 4 670 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01504 Rops-Chr8 33867611 33875481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01504 22 597 Calmodulin-binding Proteins AT2G36910 35.406 7.44e-103 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01504 K05658 - gmx:100791575 1857.03