Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01502 ATGGCTACCCAACAATCTTTGCTAGACAAGCCCAGAAAATCCCTTTCCAAAACATTATGGTTAATCCTTTCTTTAGTTGTTGTGATAAGCTCATCAGCACTCATTGCTTCTTATTTCATAAAACCCACCTCCTTGTTCAACCTCTCCTCACCTCCCAATGTTTGTGAATATGCACTTGATAAAGCATCTTGCTTAGCTCATGTCTCAGAGGTAGCTCAAGGTCCAATCTTGGCTACCACGAAAGACCACAAATTGAATATACTCATATCCTTACTAACCAAGTCCACCACACACATTCAAAAAGTGATGGCCACATCAAATGCTATCACACACCGTATTAATAGTCCCAAAGAGGAAGCAGCTCTTCACGACTGTGAGCAACTAATGGACTTGTCCATGGACAGAGTTTGGGACTCAGTGGTAGCTCTGACGAAAAACACCATTGATTCGCAGCAAGATGCACACTCATGGCTAAGCAGCGTGCTCACCAACCATGTAACTTGCTTGGATGGATTAGAGGGTCCATCTCGGGCCCTTATGGAGGTTGAGGTTGAAGACTTGATATCAAGATCAAGAACTTCTCTGGCCGTGCTTGTTGCTGCTTTGCCTCAAAAGGGATGGGCAGAATGGGATCCCCAAAGTAAGGACTTTCTGCAAACTTTGTATTATGGAGAGTATATGAATAGTGGACCAGGTGCTGGCACCAGCAAGAGAGTGAATTGGCCTGGTTACCATGTCATCACTAGTGCAGCAGAGGCTAGTAAGTTTACAGTTACTCAACTCATCCAAGGTAATGTTTGGTTGAAGAACACTGGGGTGAACTACATTGAGGGCCTCTAA 840 0.4429 MATQQSLLDKPRKSLSKTLWLILSLVVVISSSALIASYFIKPTSLFNLSSPPNVCEYALDKASCLAHVSEVAQGPILATTKDHKLNILISLLTKSTTHIQKVMATSNAITHRINSPKEEAALHDCEQLMDLSMDRVWDSVVALTKNTIDSQQDAHSWLSSVLTNHVTCLDGLEGPSRALMEVEVEDLISRSRTSLAVLVAALPQKGWAEWDPQSKDFLQTLYYGEYMNSGPGAGTSKRVNWPGYHVITSAAEASKFTVTQLIQGNVWLKNTGVNYIEGL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01502 279 Pfam Pectinesterase 200 265 IPR000070 GO:0030599|GO:0042545
Rops8g01502 279 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 196 IPR035513 -
Rops8g01502 279 NCBIfam pectinesterase inhibitor domain 85 186 IPR006501 GO:0004857
Rops8g01502 279 PANTHER PECTINESTERASE 204 269 - -
Rops8g01502 279 SMART PMEI_2 46 197 IPR006501 GO:0004857
Rops8g01502 279 FunFam Pectinesterase 3 52 201 - -
Rops8g01502 279 CDD PMEI-like_4 63 200 - -
Rops8g01502 279 Pfam Plant invertase/pectin methylesterase inhibitor 53 184 IPR006501 GO:0004857
Rops8g01502 279 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 190 IPR035513 -
Rops8g01502 279 SUPERFAMILY Pectin lyase-like 206 278 IPR011050 -
Rops8g01502 279 Gene3D - 197 279 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01502 Rops-Chr8 33852758 33854798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01502 206 279 Carbohydrate Esterase AT1G11580 59.459 1.19e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01502 K01051 - gmx:100815836 267.314