Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01501 ATGGCTACCCAACAATCTTTGCTAGATAAGCCTAGAAAATCCTTTTCAAAATCTTTCTGGTTATTCCTCACTTTAGTTGCTGTGATAAGCTCATCAGCCCTTATTGCTTCTTATGTCAAGAAACCCACCTTCTTGTTCAACCTCTCCTCCACTCCCAATGTTTGTGAGCATGCACTTGATAAAGCATCCTGCTTAGCTCATGTCTCAGAAGTAGCTCAAGGTCCCAACTTGGCTACCATAAAAGACCACAAATTGAATGTGCTGATATCCTTACTAACCAAGTCCACCACACACATTCAAAAAGCTATGGACACAGCCAATGCCATCAAATACCGGATTAACAGTCCAAAAGAGGAAGCCACTTTACGCGACTGTGAACAACTAATGGACTTGTCCATGGACAGAGTTTGGGATTCAGTGGTAGCTCTGACAAAAAATACCATTGAATCGCAGCAAGATGCACACACATGGCTAAGTAGCGTGCTCACTAACCATGCGACTTGCTTGGATGGATTAGAGGGTCCATCTCGAGCCCTTATGGAGGTCGAGGTTGAGGACTTGATATCAAGAGCCAGAACTTCTCTAGCTGCGCTTGTTGCTGTTTTGCCTCAAAAGGGCCGCCCATGGAAGAAGTATTCCAGAACCGTTGTGATGCAGTCCACAGTGGATAGCCATATTGACCCTGTAGGTTGGGCAGAATGGAGTGATCAAACCAAGGACTATTTGCAAACGTTGTATTATGGAGAGTACATGAACAATGGACCAGGTGCTGGTACTAGCAAGAGAGTGAACTGGCCTGGTTACCGTGTCATCAAAACTGCAGCGGAGGCCAGCAAGTTTACAGTTACCCAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGAACTTCATTGAGGGCCTATAG 912 0.4539 MATQQSLLDKPRKSFSKSFWLFLTLVAVISSSALIASYVKKPTFLFNLSSTPNVCEHALDKASCLAHVSEVAQGPNLATIKDHKLNVLISLLTKSTTHIQKAMDTANAIKYRINSPKEEATLRDCEQLMDLSMDRVWDSVVALTKNTIESQQDAHTWLSSVLTNHATCLDGLEGPSRALMEVEVEDLISRARTSLAALVAVLPQKGRPWKKYSRTVVMQSTVDSHIDPVGWAEWSDQTKDYLQTLYYGEYMNNGPGAGTSKRVNWPGYRVIKTAAEASKFTVTQLIQGNVWLKNTGVNFIEGL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01501 303 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Rops8g01501 303 SUPERFAMILY Pectin lyase-like 205 302 IPR011050 -
Rops8g01501 303 NCBIfam pectinesterase inhibitor domain 18 177 IPR006501 GO:0004857
Rops8g01501 303 Pfam Pectinesterase 206 289 IPR000070 GO:0030599|GO:0042545
Rops8g01501 303 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 178 IPR035513 -
Rops8g01501 303 SMART PMEI_2 46 197 IPR006501 GO:0004857
Rops8g01501 303 CDD PMEI-like_4 63 201 - -
Rops8g01501 303 PANTHER PECTINESTERASE 29 198 - -
Rops8g01501 303 Gene3D - 203 303 IPR012334 -
Rops8g01501 303 Pfam Plant invertase/pectin methylesterase inhibitor 53 186 IPR006501 GO:0004857
Rops8g01501 303 FunFam Pectinesterase 3 52 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01501 Rops-Chr8 33847038 33849598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01501 206 303 Carbohydrate Esterase AT1G11580 64.286 9.80e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01501 K01051 - gmx:100815836 262.307