Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01488 ATGGAGAACAAGGCAACAATTCTGATGCAAAGGTATGAGCTTGGACGCTTGCTTGGGCAAGGAAATTTTGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGTGTAGCCATCAAAGTCTTTAACAAAGAGATGGTCATGAGGGTTGGTTTGAAGGAGCAAATCAAGCGTGAAATCTGTGTGATGCGTCTTGTGAGGCACCCCAACATTGTGCAACTCTATGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAATATGTGAAAGGTGGTGAACTTTTTAATAAAGTGTCCCAAGGGAAGCTGAGGGAAAATCTGGCCAGAAAATATTTCCAACAGCTGATTGATGTTGTTGGTCATTGCCACAGCAGAGGGGTGTATCACCGTGACCTCAAGCCAGAGAACCTTCTCTTGGATGAAAATGGGGACCTCAAAGTTACAGACTTTGGTTTGAGTGCATTGTTGGAATCAAAGAGGAATGATGGCCTTCTTCACACAACATGTGGGACTCCAGCTTATGTAGCACCTGAGGTGATCAAGAAGAAAGGATATGATGGAGCCAAGGCTGATATTTGGTCTTGTGGGGTGATTCTTTATGTTCTATTAGCAGGATTTCTTCCTTTCAATGATAAGAATCTAATTGAAATGTACAGGAAGATTACTAGAGCAGATTTCAAGTTCCCACAATGGTTCCATTCAGATGTGAAAAGGCTTCTCTATAGAATCCTTGATCCCAATCCAAGGACAAGAATTAGTATTGACAAGATCATGCAAAGCCGTTGGTTTAGAAAGGGGTATAAGCAGATTGAAGCACCTCAGCTTCCACCACCCTTATCCCCTACAGGTGAGGATATCTCGGATGTTCAGGCTGCATTTGATTCATCAAATTCAGATGATGGCTCAATATCAAATAATGAAGAATGCCCCATGAAGCCATATTGTTTCAATGCATTTGATCTCATATCACTCTCTTCAGGATTTGATCTTTCTGGTCTGTTTGAGGAAGGTAAGAGTGAAATACAAGAGGCAAGATTTACTACTAAAAAACCACCTTCAGCAGTTGTGTCAAAACTTGAAGAGATAGCACAGATAGATGGTAGATTTAAGGTCATGAAGAAAAATGGGGTTGTTAGATTGGAGGAAAGCAAGACAGGGCTACAAGGTCCACTCATTATAGAGGCAGAAATTTTTGAAGTTACATCTTCCTTTTATATTGTTGAAGTGAAGAATATTGTTGGAGACACATTGGAATATAGGAAATTCTGGAACCAGTACTTCAAGCCTGCTCTAAATGAAATAGTATGGGTTTGGCAAGGATATGAGCAGCAGAAATAG 1347 0.4068 MENKATILMQRYELGRLLGQGNFAKVYHARNLKTGQSVAIKVFNKEMVMRVGLKEQIKREICVMRLVRHPNIVQLYEVMASKTKIYFAMEYVKGGELFNKVSQGKLRENLARKYFQQLIDVVGHCHSRGVYHRDLKPENLLLDENGDLKVTDFGLSALLESKRNDGLLHTTCGTPAYVAPEVIKKKGYDGAKADIWSCGVILYVLLAGFLPFNDKNLIEMYRKITRADFKFPQWFHSDVKRLLYRILDPNPRTRISIDKIMQSRWFRKGYKQIEAPQLPPPLSPTGEDISDVQAAFDSSNSDDGSISNNEECPMKPYCFNAFDLISLSSGFDLSGLFEEGKSEIQEARFTTKKPPSAVVSKLEEIAQIDGRFKVMKKNGVVRLEESKTGLQGPLIIEAEIFEVTSSFYIVEVKNIVGDTLEYRKFWNQYFKPALNEIVWVWQGYEQQK* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01488 448 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Rops8g01488 448 CDD STKc_SnRK3 11 265 - -
Rops8g01488 448 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Rops8g01488 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 424 - -
Rops8g01488 448 FunFam Non-specific serine/threonine protein kinase 5 311 - -
Rops8g01488 448 FunFam Non-specific serine/threonine protein kinase 314 439 - -
Rops8g01488 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Rops8g01488 448 CDD CIPK_C 320 435 - -
Rops8g01488 448 Pfam NAF domain 317 376 IPR004041 GO:0007165
Rops8g01488 448 SUPERFAMILY Protein kinase-like (PK-like) 8 302 IPR011009 -
Rops8g01488 448 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01488 448 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01488 448 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Rops8g01488 448 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01488 448 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Rops8g01488 448 Gene3D Kinase associated domain 1, KA1 314 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01488 Rops-Chr8 33506449 33508116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01488 1 443 CBL-interacting serine-threonine protein kinases AT5G45820 64.640 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops8g01488 Pkinase 4.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01488 K07198 - gmx:100807927 707.983