LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g01487	ATGACCATGGCAAACGTGAATCCCAAAAAGGTCAACTCTCCCAACACCACAATCACCAACAAGAAGAAGAAGGAAACACCGAATCCTTTACTGGGTCGGTTTGAGATTGGAAAACTCCTTGGCCATGGAACCTTTGCAAAGGTGTACCATGCTAAGAACATCAAAAACGGAGAAGGAGTTGCCATCAAGGTGATAGACAAAGAGAAAATCCTAAAGGGTGGTTTGATGTCACACATAAAACGCGAGATCTCAATCCTACGCCGTGTCAGACACCCCAACATAGTTCAACTCTTTGAAGTGATGGCCACAAAGACCAAGATCTATTTTGTGATGGAATATGTTCATGGTGGTGAGCTTTTCAACAAGGTTGCAAAAGGTAGGCTTAAGGAGGAAGTTGCAAGGAAGTATTTTCAGCAGTTGATCTCTGCTGTTGGGTTTTGCCATGATAGAGGGGTGTATCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTGATCTCAAGGTTTCAGATTTTGGGTTGAGTGTGATGTCTGATGAAATAAGACAAGATGGGTTGTTCCACACTTTTTGTGGAACCCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGGTATGATGGTGCAAAGGTTGATATTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCTTTCCATGACCGTAATGTGATGGCTATGTATAAGAAGATTTACAAGGGTGATTTTAGGTGTCCAAGGTGGTTCTCACCTGACTTAACTAAGCTCCTTTCTGGGCTTCTTGATACCAAGCCTGATTCCAGGATTGGCATTCCTGAGATTATGGAGAATAAGTGGTTCAAGGAAGGGTTTAAACTAATTAAGTTTTATGTTGAAGATGATAGGCTTTGTAGTGTTCAGGATGATGATAACCTTGTGGATAATGAAGATGATTTAGTATCTGTTGCATCTGTTTCTGATTACTCAGTATCAGAGTCTGATTCTGAGGTAGAGATTAGAAGGAAGAATGCTCCTTTGCCAAGACCAGCAAGTTTGAATGCTTTTGATATTATATCATTCTCTCCAGGTTTTGATCTTTCTGGCTTGTTTGAGGAAAAAGGTGATGAGGCAAGGTTTGTGACTGCTGCACCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGCTAAGTTGATGAGATTTACTGTAAGGAAGAAAGATTGCAGGGTGAGCTTGGAAGGTACTAGAGAAGGTGTAAAGGGGCCATTGACAATTGCTGCAGAGATATTTGAATTGACACCATCTTTGGTTGTGGTTGAGGTGAAGAAAAAGGGAGGGGACAAAGCAGAATATGAGAGATTTTGTAACAATGAATTGAAACCTGGGCTGCAGAATTTGATGGTGGAGGAATCTGCAACTTCTTCAGGCTTGTCCACACCTTCTGAACCTTCTTCCCTAAGACGTGTGCTTTCTGAACCTGTGCACCTTTCGGATATTGAATATCCACACTATGTACCCTCAGATACCTGA	1533	0.4181	MTMANVNPKKVNSPNTTITNKKKKETPNPLLGRFEIGKLLGHGTFAKVYHAKNIKNGEGVAIKVIDKEKILKGGLMSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVHGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHDRGVYHRDLKPENLLLDENGDLKVSDFGLSVMSDEIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYKGDFRCPRWFSPDLTKLLSGLLDTKPDSRIGIPEIMENKWFKEGFKLIKFYVEDDRLCSVQDDDNLVDNEDDLVSVASVSDYSVSESDSEVEIRRKNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIAKLMRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYERFCNNELKPGLQNLMVEESATSSGLSTPSEPSSLRRVLSEPVHLSDIEYPHYVPSDT*	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g01487	510	CDD	STKc_SnRK3	33	287	-	-
	Rops8g01487	510	FunFam	Non-specific serine/threonine protein kinase	24	344	-	-
	Rops8g01487	510	Gene3D	Transferase(Phosphotransferase) domain 1	24	344	-	-
	Rops8g01487	510	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Rops8g01487	510	CDD	CIPK_C	354	465	-	-
	Rops8g01487	510	Gene3D	Kinase associated domain 1, KA1	348	469	-	-
	Rops8g01487	510	FunFam	Non-specific serine/threonine protein kinase	25	113	-	-
	Rops8g01487	510	ProSiteProfiles	Protein kinase domain profile.	34	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g01487	510	Pfam	NAF domain	350	406	IPR004041	GO:0007165
	Rops8g01487	510	MobiDBLite	consensus disorder prediction	1	24	-	-
	Rops8g01487	510	ProSiteProfiles	NAF domain profile.	348	372	IPR018451	GO:0007165
	Rops8g01487	510	Pfam	Protein kinase domain	34	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g01487	510	ProSitePatterns	Protein kinases ATP-binding region signature.	40	63	IPR017441	GO:0005524
	Rops8g01487	510	SUPERFAMILY	Protein kinase-like (PK-like)	31	289	IPR011009	-
	Rops8g01487	510	SMART	serkin_6	34	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g01487	510	MobiDBLite	consensus disorder prediction	1	25	-	-
	Rops8g01487	510	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	28	462	-	-
	Rops8g01487	510	FunFam	Non-specific serine/threonine protein kinase	350	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g01487	Rops-Chr8	33497157	33498908	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g01487	22	510	CBL-interacting serine-threonine protein kinases	AT4G18700	74.549	0.0	740

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Rops8g01487		Pkinase	1.7e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g01487	-		-	gmx:100790133	802.357