Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01479 ATGTCTTCTATTTCTAGCAGGACTCGTAGCAAGAAAGTTTCGCCATTGATGAGTCTCCCATTCAGTGGATCATCTTCTGAGACTGTCAAATCCAAGCGTGGAAGGAAAGCTAGAAGTGGTTCTGGTTCTTTTGATGAGAGGAGGAAAAGGAGGATGAGAATGGAGAAAAGGGTAGGTGAAGAAAACATGAGTAGTGAAGATGAAAGGGTCTCTATTTCTAGTAGTGAAGGTGAATATGAGAGTGCAAGAGGGGAAAAGGGATCATCAGCTTATGGAGCTTCATCTTCTAGAAGGTGTTTGAAGGGTAAAAGTTCTGAAACTGATCTTGTGTTTGTGGGAGAATCTGCGGATAAAAGGGGATTGGTCTTTGTTTCTGGGTGTAAAAGAAGGAGGGAATCTCCTGTGGAGGCTGAAACTAGAGAGGTTATTGAAATTGATGAGAGTGATGATGATGATGATGATGATGATGACAATGGTATTGAAGAGAAAATGTTTCAGGGTGTTGTTGATGTTGAAGAGGAAGATAATATTGAGGAAGGTAAAGGAAGTGACATGTTTGGTAATAAAGATAAAATCTTTGTCAATGATGGGTGTGATCATGGACCTGCAAACCCAGTTACAATTGATTCAGATGGAGATAGGGACAGTGTGGAAGAATGTGGTATGATTGAAAGTAATTCAGCAAAAGGAAATATTGAGAGCCATGATGATGGCGATGATGATGATAATGGTGCTGAAGAAATATTGAAGCATTCTGAGAAGAGTGAGGAAGGTACAGGAAGTAACGTATTTGCTGAGAAAGGTGAAAACTTTGGAAATGATAACTTTGGAATGGGACCTTCCAACGTTATTGAAATTAGTGAGACTGAGGAAGAAGAACATGGAGATAGTCAGACCGGGGAAGAATATGACGTGACTGAAAGTGATTCATTCACTTATGGTTTTCTTTGTAGTTCAACGGATAGTGAAGATAACGAAACTAGTGATGAAGATTATCACGTTGATGAAGAGGATGGAAGTTCGAGCAGTGAAGACAGTTCTGACTCTTCTGACGATGATAACAAGGAGAGGAGGAGATATAGCAGGGTGGTGGAGAAGTGGAAGAGAAAGGTGAAGGATGAAAGAGATGGAGTTTACAGAAAAAATGGTTTGAGGAAATATCAACTGGTAGAGGAAGGAGAGCATGAAAATACTCCATCCTTGGTAAACAGTGGTGAAGATTATGATAGTGACACCTCCAGTGAACTCCAGATGAATGGTGGCTCACCAAAGGATAAGAATGAGATAGGGGATTTAACTAAGGTCAAGAAGAGGAAGAGAAATAATGCCAGTGCTAACAATGCTGACCGTGTGAATCTTGATTCTCGTAAAGGAAAAGAGCACCATGACAAAGGTAAAAGGGTGAGGAGTGATTCTTCATTGCTAGAAAACAAAGAGAAGATTGGAGATTCTACTAAAGCTAGAATCATGGAGAAGAAGAGAAGGGAACATAAATATGGAAATACCAAGAGTGATCGTGAAAAGAAGGCAAGGGTGGATAAAGAAACTGGTCATAGAGATGGTAAGCTTAAGGTTCCAAGGAAGCCATCTAGGCGGAAGGAGGAACATTTAATTGAACTCCTTTATGAATGCTTCCAGGACAAGCATGATTCTGTTGAAGGTGATTCAAATGGGTTGCAAGAAAAGGATGATGATGTTAATGAGCAAGATACTCAGCCACCAGACTGTGAGGAGACACCCACATTGAAGCTTGTATATGAACTATCTAAGGAGGAGATGGTTAAATTGTGGAAAGAACTGGAAATGGCGCTTAGAGAAGAAGAAATGTATTTCCTGGTGGGCAATATAGGGACCAATGAAACGAAACAAAACACAGGAAGTTCAACCCCCAATTGTAAGCATGACTTTACTCTTAACGAGGAGATTGGGATATATTGCAAACTTTGTGGTTGGGTTGCCACTGAGATCAGACATGTCGATCCACCATTTGCTACTGGTCATTTCGGAAGATCAAGAAAAAGGGAGTCATCTGATGAAGCAAACATCTCACCCTTTGATGGGGATCAGTTTAATGTTTCTAATGGTGACTCACAAGCACCTTGCTCTCATAATGAAGGCACAGTCTGGGACCTAATACCTGATATTAAACAAAGCTTATACCCTCATCAACAAGAAGGTTTTGAGTTCATTTGGACAAATCTGACAGGAACCATTGACCTTGACAAGTTGAAGAGTGCTGATCCTTGTAGCTCAGGTGGGTGCATTATTTCCCATGCTCCTGGAACTGGAAAGACAAGGTTGACTATGGTGTTCCTTCAGACATATTTGCAAGTGTTTCCAAGATGCCTACCTGTTATTGTTGCTCCTGCTAGCATACTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATAGGAGTTCCATTCCACAACTTGAACAATCCTGAGTTATCCGGAAAAGAGCATGTTAATGCCACTAACAGAGTTGATTTGTCTAGAAATCGATCCCAGAATAAGGATGCCGTACGTATGGTGAAGTTGTACTCATGGTCCAAAGAGAGGAGCATTCTTGGAATTAGCTACCATTTGTATGAGAAACTTGCAGGGGGTATATCCAAAGCTGATGTGAAAACTAAGAAGAAAAAAGGAAACATGAAAGAAGAGAAGCAACATGTAACTGGGAAAGAGAACACTAAAAGTGATATGATAGGAAAGGTTCTGCTTGATCATCCTGGTTTGTTAATTCTAGATGAAGGGCACACACCAAGAAATCAGCGTAGTAATATTTGGAATGTTCTGAAAGGAATTCAAACTCAGAAGCGAATTATCCTTTCAGGGACTCCTTTCCAGAACAATTTTCTAGAACTGTATAACACTATATGCATAGTGAAACCATCCTTTTCTGAGAAGTTACCAAGGGATCTCAAAAAGTTCTGCCAGAGTAGACTAATGCATGAAAAAAAGAAAGCATCCCCCCAAGATATGACTTGGGAACCAGTTGGTTCTGGCAACAACAACACAACAACAACAGGAAATTCTGCTGATGAAATGATAAACCAGTTGAAATTGCTGATGGATCCGTTTGTTCATGTTCACAAAGGCAGCATACTACAAAAAAACCTTCCTGGGAAGAAAGATTGTGTTCTGACTTTGAAGCCTGAGAATATTCAGAAAAAAATTCTAGAGTGCATTGAATGTTCTCAGAACACTTTGAACTTTGAGCACAAGGTGGCTTTGGTATCTGTCCATCCATCCCTCTTCCTCACCTGCCCTCTTTCAGAAAAGGAAGAACTTGTTATTAAAGAGGAGAAGTTGGAAGAGCGCAGGTTGGACCCCTATACAGGTGTCAAAACCAGATTTTTGGTGGAGTTTGTCAGGATGTGTGATGCATTCAATGAGAAAGTTCTTGTTTTTAGCCAATTCATTGATCCTTTGAGTTTAATTAAAGAACAACTCAAGTCAGTTTTCAATTGGTATGAAGGGAAGGAAGTGTTGTGTATGTATGGCAAGCTTGAACAAAAGGAAAAGCAGATCAGGATTCATAGCTTCAATGATGCAAATAGCCAAGCCAAGATAGTGCTTGCATCTACAAAAGCATGTTCAGAGGGAATTAACTTAGTTGGAGCTTCAAGGGTTGTGCTCTTGGATGTTGTGTGGAATCCCTCAGTGGAAAGGCAAGCTATTAGCAGAGCATATAGACTTGGCCAAAAAAGAGTTGTTTACACATATCATCTTCTCACAGAGGGAACCCCTGAATGTATAAAGCATTGTAAACAGGCAGAAAAGGACCGGATTTCTGAACTGGTTTTCTCATCTAGAAATGTTGAAGATGATAGGCCAATGAGTTGTGCGGAAAATTTTGAAGATAGAGTTCTTGATGGGATGGTCAGGCATGACAAACTCAAGGACATGTTTGCTGAATGTGTGGTACAGCAAAAGGAGAAAGATTTGTTTTGA 3957 0.4026 MSSISSRTRSKKVSPLMSLPFSGSSSETVKSKRGRKARSGSGSFDERRKRRMRMEKRVGEENMSSEDERVSISSSEGEYESARGEKGSSAYGASSSRRCLKGKSSETDLVFVGESADKRGLVFVSGCKRRRESPVEAETREVIEIDESDDDDDDDDDNGIEEKMFQGVVDVEEEDNIEEGKGSDMFGNKDKIFVNDGCDHGPANPVTIDSDGDRDSVEECGMIESNSAKGNIESHDDGDDDDNGAEEILKHSEKSEEGTGSNVFAEKGENFGNDNFGMGPSNVIEISETEEEEHGDSQTGEEYDVTESDSFTYGFLCSSTDSEDNETSDEDYHVDEEDGSSSSEDSSDSSDDDNKERRRYSRVVEKWKRKVKDERDGVYRKNGLRKYQLVEEGEHENTPSLVNSGEDYDSDTSSELQMNGGSPKDKNEIGDLTKVKKRKRNNASANNADRVNLDSRKGKEHHDKGKRVRSDSSLLENKEKIGDSTKARIMEKKRREHKYGNTKSDREKKARVDKETGHRDGKLKVPRKPSRRKEEHLIELLYECFQDKHDSVEGDSNGLQEKDDDVNEQDTQPPDCEETPTLKLVYELSKEEMVKLWKELEMALREEEMYFLVGNIGTNETKQNTGSSTPNCKHDFTLNEEIGIYCKLCGWVATEIRHVDPPFATGHFGRSRKRESSDEANISPFDGDQFNVSNGDSQAPCSHNEGTVWDLIPDIKQSLYPHQQEGFEFIWTNLTGTIDLDKLKSADPCSSGGCIISHAPGTGKTRLTMVFLQTYLQVFPRCLPVIVAPASILLTWEDEFKKWDIGVPFHNLNNPELSGKEHVNATNRVDLSRNRSQNKDAVRMVKLYSWSKERSILGISYHLYEKLAGGISKADVKTKKKKGNMKEEKQHVTGKENTKSDMIGKVLLDHPGLLILDEGHTPRNQRSNIWNVLKGIQTQKRIILSGTPFQNNFLELYNTICIVKPSFSEKLPRDLKKFCQSRLMHEKKKASPQDMTWEPVGSGNNNTTTTGNSADEMINQLKLLMDPFVHVHKGSILQKNLPGKKDCVLTLKPENIQKKILECIECSQNTLNFEHKVALVSVHPSLFLTCPLSEKEELVIKEEKLEERRLDPYTGVKTRFLVEFVRMCDAFNEKVLVFSQFIDPLSLIKEQLKSVFNWYEGKEVLCMYGKLEQKEKQIRIHSFNDANSQAKIVLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKRVVYTYHLLTEGTPECIKHCKQAEKDRISELVFSSRNVEDDRPMSCAENFEDRVLDGMVRHDKLKDMFAECVVQQKEKDLF* 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01479 1318 MobiDBLite consensus disorder prediction 989 1012 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 128 532 - -
Rops8g01479 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 1273 IPR027417 -
Rops8g01479 1318 Gene3D - 1042 1316 IPR027417 -
Rops8g01479 1318 Pfam Helicase conserved C-terminal domain 1129 1235 IPR001650 -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 452 532 - -
Rops8g01479 1318 SMART ultradead3 715 978 IPR014001 -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 397 421 - -
Rops8g01479 1318 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 231 1316 IPR044567 GO:0080188
Rops8g01479 1318 MobiDBLite consensus disorder prediction 551 578 - -
Rops8g01479 1318 Gene3D - 693 1000 IPR038718 -
Rops8g01479 1318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1120 1276 IPR001650 -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 142 160 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 29 83 - -
Rops8g01479 1318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 966 IPR014001 -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 323 347 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 551 569 - -
Rops8g01479 1318 SMART helicmild6 1150 1235 IPR001650 -
Rops8g01479 1318 Pfam SNF2-related domain 726 1062 IPR000330 GO:0005524|GO:0140658
Rops8g01479 1318 CDD SF2_C_SNF 1117 1246 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 348 393 - -
Rops8g01479 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 971 IPR027417 -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 997 1012 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 1 104 - -
Rops8g01479 1318 MobiDBLite consensus disorder prediction 427 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01479 Rops-Chr8 33346401 33351241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01479 1133 1265 RAD5 or RAD16-like Gene Family AT5G43530 40.602 7.71e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops8g01479 SNF2_N 1.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01479 K10875 - gmx:100812737 1039.64