Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01478 ATGTCTAGGCGTCGAGCCTTTTCTGCAACCCGCGACTTCCCTGTGACAGTGCCATCTGATGAAGATGAAGAAGAAGAAGAAGAAGAAGCTGAAGCTTTGCCAAAAAATGCAGACACCAAGAAAACGGTTTCTACCAAACCAAGAATTCCAGCCTTCAGAGACTTCCCTTCTCTTTGTGGGCCAAGACACAGTGAAGAAGCTGAAAAGACCAAGAAACCATCACCCACCAGGGTCAAGAAAAATGTTCCTGAACAAGAACATGGTCGTTTCAACAAAAACGACAGCAAGAAGAAAAAACGTGATGGTGGTCCTCGCCTTGATGAAAACACACAAGAGTGGTCGCATGGTGACGTGGCACGAGAGAGAGTGAGGGCGACATTGCGTTTGTTCCATGCAATTTGTCGAAGCCTCGTGAACGAAGGGAATGTCGGAATTTCAGTTACAGCTTCGAAGATTCTTCAAGAGAAGGGTAAATACGTCAACACGGGTAAAAGGATTCTAGGACCTGTCCCTGGTGTTGAAGTTGGTGATGAGTTTCAATACTGGAGGGAACTCAACATAATTGGCCTTCATGGCCAACCCATGGGTGGCATTGATTATGTGAACCATGATGGGTTCACCCTTGCCACTAGTGTTGTTTCTTCAGGGATGTATGATGATGAGTTGGACAACACTGATGTGTTGGTTTATACAGGGCAGGGAGGGAATGTGATAAAAAAGGGGAATGAAAAAGAACCAAAAGATCAGGTTCTTAAGAGGGGTAATCTTGCTTTGAAGAACAGTTGTGAGGTTAAGAATCCAGTTAGGGTGATACTTAAGTCAGGGTCTAAAGATAGAAATTTTGATGTGTTTACTTATTATGGGCTTTATGAGGTTGATGAGTATTGGCAAGAGATGGGGTCACATGGGGGTTTGGTTTATAAGTTTCAGTTGAGGAGGATACCTGGTCAAGCTGAGGTTGCTTGGAAGGAGTTGAAGACATCTCAAGCTGTTAAAATGAGAAAAGGTTTATGTGTTCATGATATTTCTAATGGTAAAGAGGTGATTCCTATATGTGCTGTGAACAATGTTGATGATGAAGGGCTGCCCTTTTTTGAGTACATTACTCGTATGGTTTATCCGAATTGGTGTAACCCGATTCCTCCTTTGGGGTGTGATTGTGTTGATGGATGTTCTGATGAGAAGGATTGTTCTTGTGCAGTGAGGAATGGGGGGAAGATACCTTTCAATAAGAATAGGGCTATTTTGTTTGCTAAGTCTATGGTTTATGAGTGTGGTCCTTCTTGTAATTGTCCTTCAAGTTGTCATAATAGAGTCAGCCAAAATGGGATTCGATTTCGGTTTGAGATTTTTAAAACCAAGGCAAAGGGATGGGGTGTGAGATCCCATCATAGCATTCCTTCTGGAAGTTTTATCTGTGAGTATACAGGGGAGCTTCTTGAAGATGCTGAAGCTGAACAAAGGATTGATAATGATGAGTATCTGTTTGATATTGGGAATAACCATAGTGATAATACTCTGAGGGAAGAACTTTCAACCATTGTTGCCGATGCAGGGGCTAGTTCTTCCCAGTATTTTGAGGATGGTGGCTTTGCCATTGATGCTGCTAAATGTGGTAATTTGGGGAGATTCATTAACCATAGTTGCTCCCCTAATCTTTTTGCTCAAAATGTCCTTTATGATCATGATGACAACAGGATTCCTCACATAATGCTATTTGCTGCTGAGAACATTCCTCGTATGCAAGAGCTGACTTACCATTACAATTACAAGATAGATCAAGTATATGATTCTCATGGCAATGTAAAGAAGAAGAATTGCTATTGTGGTGCTCCGGATTGTACTGGTAGGATGTATTGA 1860 0.4199 MSRRRAFSATRDFPVTVPSDEDEEEEEEEAEALPKNADTKKTVSTKPRIPAFRDFPSLCGPRHSEEAEKTKKPSPTRVKKNVPEQEHGRFNKNDSKKKKRDGGPRLDENTQEWSHGDVARERVRATLRLFHAICRSLVNEGNVGISVTASKILQEKGKYVNTGKRILGPVPGVEVGDEFQYWRELNIIGLHGQPMGGIDYVNHDGFTLATSVVSSGMYDDELDNTDVLVYTGQGGNVIKKGNEKEPKDQVLKRGNLALKNSCEVKNPVRVILKSGSKDRNFDVFTYYGLYEVDEYWQEMGSHGGLVYKFQLRRIPGQAEVAWKELKTSQAVKMRKGLCVHDISNGKEVIPICAVNNVDDEGLPFFEYITRMVYPNWCNPIPPLGCDCVDGCSDEKDCSCAVRNGGKIPFNKNRAILFAKSMVYECGPSCNCPSSCHNRVSQNGIRFRFEIFKTKAKGWGVRSHHSIPSGSFICEYTGELLEDAEAEQRIDNDEYLFDIGNNHSDNTLREELSTIVADAGASSSQYFEDGGFAIDAAKCGNLGRFINHSCSPNLFAQNVLYDHDDNRIPHIMLFAAENIPRMQELTYHYNYKIDQVYDSHGNVKKKNCYCGAPDCTGRMY* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01478 619 ProSiteProfiles Pre-SET domain profile. 383 443 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g01478 619 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 33 612 - -
Rops8g01478 619 ProSiteProfiles YDG domain profile. 168 313 IPR003105 -
Rops8g01478 619 ProSiteProfiles SET domain profile. 446 589 IPR001214 GO:0005515
Rops8g01478 619 Pfam SET domain 457 589 IPR001214 GO:0005515
Rops8g01478 619 MobiDBLite consensus disorder prediction 59 115 - -
Rops8g01478 619 MobiDBLite consensus disorder prediction 18 32 - -
Rops8g01478 619 Gene3D SET domain 334 619 IPR046341 -
Rops8g01478 619 MobiDBLite consensus disorder prediction 1 115 - -
Rops8g01478 619 SUPERFAMILY PUA domain-like 150 326 IPR015947 -
Rops8g01478 619 SMART PostSET_3 603 619 IPR003616 -
Rops8g01478 619 Gene3D - 150 333 IPR036987 -
Rops8g01478 619 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 25 619 IPR025794 GO:0016571
Rops8g01478 619 SMART set_7 446 595 IPR001214 GO:0005515
Rops8g01478 619 Pfam SAD/SRA domain 167 317 IPR003105 -
Rops8g01478 619 Pfam Pre-SET motif 342 438 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g01478 619 SUPERFAMILY SET domain 328 595 IPR046341 -
Rops8g01478 619 SMART G9a_1 163 317 IPR003105 -
Rops8g01478 619 ProSiteProfiles Post-SET domain profile. 603 619 IPR003616 -
Rops8g01478 619 SMART preset_2 339 430 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01478 Rops-Chr8 33319593 33321452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01478 156 619 EF-hand Containing Proteins AT5G13960 40.486 1.15e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops8g01478 SAD_SRA 1.2e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01478 K11420 - lang:109363359 733.791