Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01475 ATGACTTCTAAACCTGACCATGGAGATGGCTTCAATGGTGAGGGTGCATCAAAGCCAGTCCATTTTTTCAGAATCATACTCCCTGAAACCCTTTTGCAGGGAAAGCTAAGAATTCCGGGAAAGTTTGTGAGGAAATATGGAAAATGCTTATCCAACACTATGTTTCTTAAACTTCCAAACGGAGAAGAATGGAAAGTAAGTGTGGAGAAACATGATGGTGGAGTTTGGATTCACAAGGGTTGGAAAGAGTTTGTGGAGTATTATTCTATAGCCATTGGGCACCTATTGGTTTTTAGATATGATGGAACAACATCCCTTTTCCATGTTCTTATTTGTGGTTTGAGTACCATGGAAATAGACTACCCTTTCAACGAGGTAGATTGTAAAAGGGTCACTAATAGTGAACTTCAACCACATAAGATCTGTAGAACAAATGAAAACAACAAAGATGAGAGTAATTCATATTTGCAGGACTGCAAAGTTAGTTTTCCTCTTACAGGTATGTTGGAGAATCCAAGTGAAGACAAGAACATTGACCAGCATACTAAAAGGTCATCCATTAGTGATTGTGATTGTGGTGAAGCTGCTGCCAATACTTCCTTCATGGTGATAATGAAGTCACGCCACTTAATTCGGGAATTGAGATTGTCAAAGGGAATACTGCAGGGCTACATAAAACCCGGTGGACAAAATGTTACTCTGCTGGTTGGGGACAAATCATGGAAGGTTAATTTGATCCATTACCCAAACCTTAGATATAATTGCATTTCTGCAGGTTGGAGAACATTTGCAAGGGAAAACAATTTAGAAGAAGGAGATGCTTGCTTGTTTGAGCTGCTAAATAGTAGTAGTGATGACATGATGATGAAAGTTTTCATTTATAAACGCTCCTCTGTTAAGTCACAAGGGGGGCATTAA 918 0.3911 MTSKPDHGDGFNGEGASKPVHFFRIILPETLLQGKLRIPGKFVRKYGKCLSNTMFLKLPNGEEWKVSVEKHDGGVWIHKGWKEFVEYYSIAIGHLLVFRYDGTTSLFHVLICGLSTMEIDYPFNEVDCKRVTNSELQPHKICRTNENNKDESNSYLQDCKVSFPLTGMLENPSEDKNIDQHTKRSSISDCDCGEAAANTSFMVIMKSRHLIRELRLSKGILQGYIKPGGQNVTLLVGDKSWKVNLIHYPNLRYNCISAGWRTFARENNLEEGDACLFELLNSSSDDMMMKVFIYKRSSVKSQGGH* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01475 305 CDD B3_DNA 200 295 IPR003340 GO:0003677
Rops8g01475 305 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Rops8g01475 305 Gene3D - 15 115 IPR015300 -
Rops8g01475 305 PANTHER B3 DOMAIN-CONTAINING 17 281 - -
Rops8g01475 305 SMART B3_2 22 115 IPR003340 GO:0003677
Rops8g01475 305 SMART B3_2 201 299 IPR003340 GO:0003677
Rops8g01475 305 SUPERFAMILY DNA-binding pseudobarrel domain 198 297 IPR015300 -
Rops8g01475 305 Pfam B3 DNA binding domain 29 112 IPR003340 GO:0003677
Rops8g01475 305 Pfam B3 DNA binding domain 214 292 IPR003340 GO:0003677
Rops8g01475 305 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Rops8g01475 305 ProSiteProfiles B3 DNA-binding domain profile. 239 297 IPR003340 GO:0003677
Rops8g01475 305 CDD B3_DNA 21 112 IPR003340 GO:0003677
Rops8g01475 305 Gene3D - 182 298 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01475 Rops-Chr8 33258029 33259333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01475 22 295 B3 DNA Binding Superfamily AT3G18990 27.893 1.67e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01475 B3 1.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01475 - - aprc:113849508 357.066