Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01474 ATGCGTATAGTTCCGCTCAAGGAATGCAAAGAGTCACACTGTCTTCCCCTCAGTGGCAGCAGATTTGAAGCACTTACCTCTGCTGAAGATCCCTTTTTACGGGAAACTTGGACGATGGGAATGACTTCTAAAGCTAACCATGGAGATGGCTTCAATGGTTATGGTGTATCAAAGCCTATTCACTTTTTCAGAATCATGTACCCTGAAACCCTTTTGCAGGGAAAGCTAAGGATTCCGGGAAAGTTTGTGAGGAAATATGGAAAATGCTTATCCAACACTATGTTTCTTAAACTTCCAAACGGAGAAGAATGGAAAGTAAGTGTGGAGAAACATGATGGTGGAGTTTGGTTTCACAAGGGTTGGAAAGAGTTTGTGGAGTATTACTCTATAGCCATTGGGCACCTATTGGTTTTTAGATATGATGGAACAACATCCCTTTTCCATGTTCTTATTTGTGGTTTGAGTACCATGGAAATAGACTACCCTTTCAACGAGGTAGATTGTAAAAGGGTCACTAATAGTGAACATCAACCACATAAGATCTGTAGAACAAATGAAAACAACAAAGATGAGAGTAATTCATTTTTGCAGGACAGTAAAGTTAGTTTTCCTATTACAGGTCTGTTGGAGAATCAAAGTGAAGAGAAGAAGAACATTGACCAGCATACTAAATGGTCATCCGTTAGTGATTGTGATTGTGGTGAAGCTGCTGCCAATACTTCCTTCATGGTGATAATGAAGCCATTCAACTTAACGCATTATGTGTACCTGCCAAAGGGATCACTGCAGGGCTACATCAAACCCGGTGCTCAAATTGTTAGGCTGCTGGTTGGGGACAAATCATGGAGGGTTAATTTGATCCTTTACCCAAACCTTAGATATGATTGCATTTCTGCAGGTTGGAGAACATTTGCAAGGGAAAACAATTTAGAAGTGGGAGATGCTTGCTTGTTTGAGCTTCTAAATAGTAGTGATGACATAATGATGAAGGTCTTCATTTATAAACGCTCTTATGTTAAGTCATAA 1026 0.3986 MRIVPLKECKESHCLPLSGSRFEALTSAEDPFLRETWTMGMTSKANHGDGFNGYGVSKPIHFFRIMYPETLLQGKLRIPGKFVRKYGKCLSNTMFLKLPNGEEWKVSVEKHDGGVWFHKGWKEFVEYYSIAIGHLLVFRYDGTTSLFHVLICGLSTMEIDYPFNEVDCKRVTNSEHQPHKICRTNENNKDESNSFLQDSKVSFPITGLLENQSEEKKNIDQHTKWSSVSDCDCGEAAANTSFMVIMKPFNLTHYVYLPKGSLQGYIKPGAQIVRLLVGDKSWRVNLILYPNLRYDCISAGWRTFARENNLEVGDACLFELLNSSDDIMMKVFIYKRSYVKS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01474 341 Gene3D - 211 338 IPR015300 -
Rops8g01474 341 CDD B3_DNA 61 152 IPR003340 GO:0003677
Rops8g01474 341 ProSiteProfiles B3 DNA-binding domain profile. 61 155 IPR003340 GO:0003677
Rops8g01474 341 SUPERFAMILY DNA-binding pseudobarrel domain 239 337 IPR015300 -
Rops8g01474 341 ProSiteProfiles B3 DNA-binding domain profile. 240 337 IPR003340 GO:0003677
Rops8g01474 341 SMART B3_2 242 335 IPR003340 GO:0003677
Rops8g01474 341 SMART B3_2 62 155 IPR003340 GO:0003677
Rops8g01474 341 CDD B3_DNA 241 332 IPR003340 GO:0003677
Rops8g01474 341 PANTHER B3 DOMAIN-CONTAINING 57 322 - -
Rops8g01474 341 Gene3D - 56 155 IPR015300 -
Rops8g01474 341 Pfam B3 DNA binding domain 251 331 IPR003340 GO:0003677
Rops8g01474 341 Pfam B3 DNA binding domain 63 152 IPR003340 GO:0003677
Rops8g01474 341 SUPERFAMILY DNA-binding pseudobarrel domain 58 153 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01474 Rops-Chr8 33247988 33249790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01474 62 335 B3 DNA Binding Superfamily AT3G18990 29.254 1.32e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01474 B3 3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01474 - - aprc:113849508 354.369