Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01473 ATGACTTCTAAACCTAACCATGGAGATGGCTTCAATGGTGATGGTGCATCAAAGCCAGTCCACTTCTTCAGGATCATGCACCCTGAAACTCTTATGCAGGGAATGCTGAGGATACCAGGAAAGTTTGTGAGGAAATATGGAAACTGCTTATCCAACACAATGTTTCTTAAAATTCCAAATGGTGCAGAATGGAAAGTAAGTGTGGAGAAACACCATGGTGGAGTTTGGTTTCATAAGGGTTGGAAAGAGTTTGTGGAGTATTACTCTCTATCCAATGGGCACCTATTGGTTTTCAGATATGATGGAACATCCTATTTTCATGTTCTCATCTGTGGTCTGAGTACCATGGAAATAGACTACCCTTTCAACAAGGTAGATTGTAAAAGGGCTAACAATTATGAACTTCAACCACTTAAGACGCAGAGAACAAATGGAAACACCAAAGTTGAGAATAATTCCAATTTGCAGGACTGCAGGGGTATGTTGAAGAATCCAAGAGAAGAGAAGAAAAACATTGACCAGCACACTAAAAGGTCATCCATCAGTGATTGTGGTGAAGCTGCTGGCAACACTTCCTTCACGGTGATAATAAAGTCACGCCACTTAAAGAAATACTTGAACCTGCCTAAGGGATCACTGAAGGGTTACATCAAATCCGGCGGACAAAATGTTATTCTGCTGGTTGGGGACAAATCATGGAGAGTTAAATTGTTCCATTACCCAAACTATTCCATAACTAGCTTTTCTGCAGGTTGGTTAACATTTGCAAGGGAGAACAATCTAGAAGTAGGAGATGCTTGCTTGTTTGAGCTGCTAGATAGTAGTGATGACATGATGATGAAGGTTTCCATTTCTAAAGGCTCCTCTGTTAAGTTATGA 879 0.4061 MTSKPNHGDGFNGDGASKPVHFFRIMHPETLMQGMLRIPGKFVRKYGNCLSNTMFLKIPNGAEWKVSVEKHHGGVWFHKGWKEFVEYYSLSNGHLLVFRYDGTSYFHVLICGLSTMEIDYPFNKVDCKRANNYELQPLKTQRTNGNTKVENNSNLQDCRGMLKNPREEKKNIDQHTKRSSISDCGEAAGNTSFTVIIKSRHLKKYLNLPKGSLKGYIKSGGQNVILLVGDKSWRVKLFHYPNYSITSFSAGWLTFARENNLEVGDACLFELLDSSDDMMMKVSISKGSSVKL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01473 292 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Rops8g01473 292 PANTHER B3 DOMAIN-CONTAINING 17 272 - -
Rops8g01473 292 Gene3D - 15 114 IPR015300 -
Rops8g01473 292 Pfam B3 DNA binding domain 23 111 IPR003340 GO:0003677
Rops8g01473 292 Pfam B3 DNA binding domain 195 284 IPR003340 GO:0003677
Rops8g01473 292 SMART B3_2 193 285 IPR003340 GO:0003677
Rops8g01473 292 SMART B3_2 22 114 IPR003340 GO:0003677
Rops8g01473 292 SUPERFAMILY DNA-binding pseudobarrel domain 189 285 IPR015300 -
Rops8g01473 292 CDD B3_DNA 193 286 IPR003340 GO:0003677
Rops8g01473 292 ProSiteProfiles B3 DNA-binding domain profile. 191 288 IPR003340 GO:0003677
Rops8g01473 292 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Rops8g01473 292 CDD B3_DNA 21 111 IPR003340 GO:0003677
Rops8g01473 292 Gene3D - 166 288 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01473 Rops-Chr8 33242425 33243813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01473 22 129 B3 DNA Binding Superfamily AT1G49475 37.963 4.91e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01473 B3 1.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01473 - - aprc:113849508 380.563