Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01471 ATGACTTCTAAAACTCACCATGGGGATGCCTTCAATGGTGATGGTGCATCAAATCCAATCCACTTTTTTAGGATCATACATCCTGAAACCCTTTTGCAGGGAAAGCTAAGGATTCCAGAAAAGTTTGTGGGGAAATATGGACAATGCTTATCCAACACAATGTTTCTTAAACTTCCAAACGGTGCTGAATGGAAAGTAAGTGTGGAGAAAGGTGATGGTGGAGTTTGGTTTCATAAGGGTTGGAAAGAGTTTGTGGAGTATTACTCTCTTGTTCATGGGCACCTATTGGTATTCAGATATGATGGAACATCCCATTTTGATGTACTCATCTGTGGTCTGAGTACCATGGAAATAGACTACCCTCTCAACAAGGTAGATGGTGAAAGGGTCAACAATAGTGAACTTCAACCACTTAAGACTTGGAGAACAAATGGAAACAACAAAGGTATGTTGAAGAATCCAAGTGAAGAGAAGAAAAACAACCAGCATACTAAAAGGTCATCCATTAGTAATTGTGGTGAAACTGCTGATAATACTTCATTCATGGTGATAATAAAGTCATACAATTTAACGGCGTTAGTGAACCTTCCAAAGGGATCACTGCAGGGTTACATAAAACCCGGTGGACAAAATGTTACTCTGCTGGTTGGGGACAAATCATGGAGGGTTAATTTGATCCATTACCCAGAACATTCATGTACTGTCATTTCTGCAGAATTTGCTGACTGTTTTCAAATAGTTGCTCCTGTCTCTTTGGTCTGCAAAATCTGCTTTAGCTTATCATCATCCAGTGTCTGTTGTCTTAGTCGCGTATTGCTCAATGAAAGAATTGTACGACTGTGTAAGGCTTCTTTCGACAAGACAGGGCCGCAAGTTCCTCCAACCACAGAGTGTTGCCAGAAATTGCAAAAGGCGGATCTTGATTGCTTATGCAAATACGTTGCTTCTCATTATCCTAACTTAAGTCAGGATAGAGTTATCCAGACAGCTGGGAATTGTGGAACCCAGTGTGGAGGTTTTAATCCTCTTCCTACGGCTGTTCCTCCTCAAACAAGACGCATACCGGGAAGTGTTTAA 1077 0.4104 MTSKTHHGDAFNGDGASNPIHFFRIIHPETLLQGKLRIPEKFVGKYGQCLSNTMFLKLPNGAEWKVSVEKGDGGVWFHKGWKEFVEYYSLVHGHLLVFRYDGTSHFDVLICGLSTMEIDYPLNKVDGERVNNSELQPLKTWRTNGNNKGMLKNPSEEKKNNQHTKRSSISNCGETADNTSFMVIIKSYNLTALVNLPKGSLQGYIKPGGQNVTLLVGDKSWRVNLIHYPEHSCTVISAEFADCFQIVAPVSLVCKICFSLSSSSVCCLSRVLLNERIVRLCKASFDKTGPQVPPTTECCQKLQKADLDCLCKYVASHYPNLSQDRVIQTAGNCGTQCGGFNPLPTAVPPQTRRIPGSV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01471 358 SUPERFAMILY DNA-binding pseudobarrel domain 18 112 IPR015300 -
Rops8g01471 358 PANTHER B3 DOMAIN-CONTAINING 17 166 - -
Rops8g01471 358 Pfam Probable lipid transfer 276 335 IPR016140 -
Rops8g01471 358 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 288 337 IPR036312 -
Rops8g01471 358 Gene3D - 155 245 IPR015300 -
Rops8g01471 358 Gene3D - 274 337 IPR036312 -
Rops8g01471 358 MobiDBLite consensus disorder prediction 143 172 - -
Rops8g01471 358 Pfam B3 DNA binding domain 27 110 IPR003340 GO:0003677
Rops8g01471 358 Gene3D - 16 114 IPR015300 -
Rops8g01471 358 SMART B3_2 22 114 IPR003340 GO:0003677
Rops8g01471 358 CDD B3_DNA 21 111 IPR003340 GO:0003677
Rops8g01471 358 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01471 Rops-Chr8 33230780 33235078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01471 22 120 B3 DNA Binding Superfamily AT3G18990 44.444 2.11e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01471 B3 6.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01471 - - aprc:113849508 290.426