Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01469 ATGGGGAAACTTTGGAATGGTAACAATTACTCAAATCAATCAGAGAGCTTGGTGTCTACGAACGAATATTTCGATCATACAACGCCGGAAAATGTGGATTTTGAATTTAAAGGACCCTGTGAAGATCGGAACTCTGTCTTCTCGAGCCCTTCAAATAGTCTGACGAGGCACATGTGGCATGCAACATTGCAGGCCAAAAGTGCTAGAAATTGTGTGAGTGTGGGAACAACAGGGGATGGGTATGCATATAATGAAGATGTGTGGCATTTTAAAATTCTGATTTCAACTAAACCACTTGTGTCTCTTGAAAATCATAGCCAGAAGGTACAAGATGAAGAAGCACAAAGACTTGAGGACAAAAATGATAAGGTTAGACTTGAGGACAATTATGATCCCATGACTGGATGGATGCATGGAGCTCAAATGGTCACATTTAATATGCAGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAAGAAAGGCTGATGTTGTTTGTTCATTCCAAAAAGATGGAAGTATATTTGCAATGGTGGGTGATGGTATCAATGACTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGAAATCGTACGAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGGGATAATTTGGAAGATGTGATCACAGTCATTGATCTTTCTAGGAAGACCTTTTCTCGTATACGATTGAATTATGTATTCGCAATGGCCTATAATATTATTCTTTGTACCGATTCTTCTTTGGGGTTTTATTTCCTTCATTGGGGATCGAGTTGCCGCCATGGGTTGCTGGTGCATGCATGGCTCTCTCATCCGTGA 843 0.4104 MGKLWNGNNYSNQSESLVSTNEYFDHTTPENVDFEFKGPCEDRNSVFSSPSNSLTRHMWHATLQAKSARNCVSVGTTGDGYAYNEDVWHFKILISTKPLVSLENHSQKVQDEEAQRLEDKNDKVRLEDNYDPMTGWMHGAQMVTFNMQVGIQDVRAEVMPARKADVVCSFQKDGSIFAMVGDGINDSPALAAADVGMAIEIVRDIAIEAANYVLMRDNLEDVITVIDLSRKTFSRIRLNYVFAMAYNIILCTDSSLGFYFLHWGSSCRHGLLVHAWLSHP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01469 280 PRINTS P-type cation-transporting ATPase superfamily signature 203 215 - -
Rops8g01469 280 PRINTS P-type cation-transporting ATPase superfamily signature 180 199 - -
Rops8g01469 280 Gene3D - 134 248 IPR023214 -
Rops8g01469 280 Coils Coil 102 129 - -
Rops8g01469 280 SUPERFAMILY HAD-like 148 273 IPR036412 -
Rops8g01469 280 SUPERFAMILY PLC-like phosphodiesterases 128 148 IPR017946 GO:0006629|GO:0008081
Rops8g01469 280 NCBIfam HAD-IC family P-type ATPase 156 252 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g01469 280 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 129 148 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops8g01469 280 Pfam haloacid dehalogenase-like hydrolase 149 194 - -
Rops8g01469 280 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 146 249 - -
Rops8g01469 280 PRINTS H+-transporting ATPase (proton pump) signature 180 196 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g01469 280 PRINTS H+-transporting ATPase (proton pump) signature 211 236 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g01469 280 PRINTS H+-transporting ATPase (proton pump) signature 152 168 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01469 Rops-Chr8 33085869 33089791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01469 148 249 Primary Pumps ATPases AT5G44790 80.392 1.74e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01469 K17686 - gmx:100778219 171.4