Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01431 ATGATCTTCAGTGGTGACAGTGAATCAAAGCCAATCCACTTCTTCAGGATCATACACCCTGAAACCCTTTTGGAGGGAAAGCTAAGGATTCCAGGAAAGTTTGCGAGTAAATATGGAAAACATCTATCCAACACAATATTTCTTAAACTTCCAAACGGTGCAGAATGGAAAGTAAGTGTGGAGAAACATGATGGTGGAGTTTGGTTTCATAAGGGATGGAAAGAGTTTGTAGAGTATTACTCTCTAGCCTATGGTCACCTATTGGTTTTCAGGTATGATGGAACACCTAATTTTCATGTGCTCATTTGTGGTCCGAGTACCATGGAAATAGACTACCCTTTCAACAAGGTAGATCGTAAAAGGGCAAACAATAGTGAACTTCAACCACATAAGTTGCAGAGAACAAATGGAAACAATAACAATGAGAGTATGATGAAGAATCCAAGTGAAGATAAGAAAAACATTGAGCAGCATACTAAAAGGTCATCCATTAGTAATTGTGGTGAAGCTGCTGGCAATACTTCCTTCATGGTGATAATAAAATCAGGCAACTGTATGTACCTGCCAAAGGGATCGCTGCAGGGCTACATCAAACCTGGTGGACAAAATGTTAAGCTGCTGGTTGGGAACAAATCATGGAGGGTTAATTTGATCCATTACCAAAACAAGTCAGCCACTTGCGTTTCTGCAGGTTGGCCAATATTTGCAAGGGAAAACAATTTAAAAGCAGGAGATGCCTGCTTGTTTGAGCTGCTAAATAGTAGTGATGACATGGTGATGAAGGTTTCCATTTCTAAACACTCCAATGCTAAGTCATAA 819 0.3993 MIFSGDSESKPIHFFRIIHPETLLEGKLRIPGKFASKYGKHLSNTIFLKLPNGAEWKVSVEKHDGGVWFHKGWKEFVEYYSLAYGHLLVFRYDGTPNFHVLICGPSTMEIDYPFNKVDRKRANNSELQPHKLQRTNGNNNNESMMKNPSEDKKNIEQHTKRSSISNCGEAAGNTSFMVIIKSGNCMYLPKGSLQGYIKPGGQNVKLLVGNKSWRVNLIHYQNKSATCVSAGWPIFARENNLKAGDACLFELLNSSDDMVMKVSISKHSNAKS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01431 272 CDD B3_DNA 182 266 IPR003340 GO:0003677
Rops8g01431 272 SUPERFAMILY DNA-binding pseudobarrel domain 181 261 IPR015300 -
Rops8g01431 272 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Rops8g01431 272 MobiDBLite consensus disorder prediction 123 166 - -
Rops8g01431 272 SMART B3_2 14 106 IPR003340 GO:0003677
Rops8g01431 272 SMART B3_2 176 265 IPR003340 GO:0003677
Rops8g01431 272 ProSiteProfiles B3 DNA-binding domain profile. 171 268 IPR003340 GO:0003677
Rops8g01431 272 Gene3D - 130 269 IPR015300 -
Rops8g01431 272 PANTHER B3 DOMAIN-CONTAINING 7 253 - -
Rops8g01431 272 MobiDBLite consensus disorder prediction 128 145 - -
Rops8g01431 272 SUPERFAMILY DNA-binding pseudobarrel domain 8 106 IPR015300 -
Rops8g01431 272 CDD B3_DNA 13 103 IPR003340 GO:0003677
Rops8g01431 272 Gene3D - 6 107 IPR015300 -
Rops8g01431 272 Pfam B3 DNA binding domain 182 264 IPR003340 GO:0003677
Rops8g01431 272 Pfam B3 DNA binding domain 19 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01431 Rops-Chr8 31838123 31839603 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01431 99 263 B3 DNA Binding Superfamily AT3G18990 26.705 1.31e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01431 B3 5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01431 - - aprc:113849508 350.132