Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01429 ATGATCTTCAGCGGTGACAGTGAATCAAAGCCAGTCCACTTTTTCAGGATCATACACCCTGAAACCCTTTTGGAGGGAAAGCTAAGGATTCCAGAAAAATTTGTCAGGAAATATGGACAACACTTATCCAACACAATGTTTCTTAAACTTCCAAACGGTGCAGAATGGAAAGTAAGTGTGGAGAAACACGATGGTGGAGTATGGTTTCATAAGGGTTGGAAAGAGTTTGTGGAATATTACTCTCTAGCCCATGGTCACCTATTAGTTTTCAGATATGATGGAACATCCCATTTTCATGTACTCATCTGTGGTCTGAGTACAATGGAAATAGACTACCCTCTCAACAAGGTAGATCGTAAAAGGGCAAACAATAGTGAACATCAACCACGAAAGATGCAAAGAAAAAATGGAAACAACAAAGATGAGAGTAATTCCAATTTGCAGGACTGCAAAGTTATGTTGAAGAATCTGAGTGAAGAGAAGAAGAACATTGACCAGCATACTAAAAGGTCATCCATTAGTGATTGTGGTGAAGCTGCTGCCAATACTTCCTTCATGGTGATGATAAAGTCCGGCTACTTTTTGTCTCACGTGTACCTGCCAAAGGGATCATTGCAGAGCAACTTCAAACCCGGTGCACAAAGTGTTACATTGCTGGTTGGGGACAAATCATGGAAGGTTAACTTGATCCATTACCAAAACAAGTCAACCACTTGCGTTTGTGCAGGTTGGTCTAAATTTGCAAGGGAAAACAATTTGAAAGTGGGAGATGCTTGCTTGTTTAAACTGCTAAATAGTAGTGATGTAAAGGTGATGAAGGTTTCGATTTTAAAACGCTCTTCTGCCAAGGCATAA 855 0.4023 MIFSGDSESKPVHFFRIIHPETLLEGKLRIPEKFVRKYGQHLSNTMFLKLPNGAEWKVSVEKHDGGVWFHKGWKEFVEYYSLAHGHLLVFRYDGTSHFHVLICGLSTMEIDYPLNKVDRKRANNSEHQPRKMQRKNGNNKDESNSNLQDCKVMLKNLSEEKKNIDQHTKRSSISDCGEAAANTSFMVMIKSGYFLSHVYLPKGSLQSNFKPGAQSVTLLVGDKSWKVNLIHYQNKSTTCVCAGWSKFARENNLKVGDACLFKLLNSSDVKVMKVSILKRSSAKA* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01429 284 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Rops8g01429 284 MobiDBLite consensus disorder prediction 120 145 - -
Rops8g01429 284 SUPERFAMILY DNA-binding pseudobarrel domain 183 278 IPR015300 -
Rops8g01429 284 ProSiteProfiles B3 DNA-binding domain profile. 183 280 IPR003340 GO:0003677
Rops8g01429 284 Coils Coil 140 160 - -
Rops8g01429 284 MobiDBLite consensus disorder prediction 120 138 - -
Rops8g01429 284 Pfam B3 DNA binding domain 187 278 IPR003340 GO:0003677
Rops8g01429 284 Pfam B3 DNA binding domain 19 103 IPR003340 GO:0003677
Rops8g01429 284 Gene3D - 157 281 IPR015300 -
Rops8g01429 284 Gene3D - 6 106 IPR015300 -
Rops8g01429 284 SMART B3_2 185 280 IPR003340 GO:0003677
Rops8g01429 284 SMART B3_2 14 106 IPR003340 GO:0003677
Rops8g01429 284 PANTHER B3 DOMAIN-CONTAINING 7 266 - -
Rops8g01429 284 SUPERFAMILY DNA-binding pseudobarrel domain 8 104 IPR015300 -
Rops8g01429 284 CDD B3_DNA 13 103 IPR003340 GO:0003677
Rops8g01429 284 CDD B3_DNA 185 278 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01429 Rops-Chr8 31833317 31834569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01429 94 278 B3 DNA Binding Superfamily AT3G18990 22.222 1.08e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01429 B3 7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01429 - - aprc:113849508 375.941