Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01428 ATGGATGGGTTGTGTAATTTGGTGAGGAAGGCGGTGGGGGCCGCGATTGTGCAGTGTGCAGATCCCTTGATCTCTTTGCCTAAGAAAGGAAGCTTGGTTGTGTACATCCTACAAGTACACTTTGAGCAAGTTCAAGATTTTTTGGTCACTGCTTATAATATCCCAACTCTGTTCTGTCGTGTTCTCGATCCACAGAAGTGTTTCTATTTTTCTACCCTTTCAGGGGACAAAACAAAACCAATGTTGTTGTTTGCAATTGGTCAGCATTCACAACACAAAGCTCATTTGTGTGTCTTGAGGATGCTGGCAATGATTTCTGAACCTAACCATGGAGATGGCTTCTATGGTGATGGTGCATCAAAGCCAGTCCACTTTTTCAGGATCATGTATCCTGAAACCCTTTTGGAGGGAATGCTAAGGATTCCAGGAAAGTTTGTGAGGAAATATGGAAAATGCTTATCCAACACTATGTTTCTTAAACTTCCAAACGGTGCAGAATGGAAAGTAAGTGTGGAGAATCGTGATGGTGGAGTTTGGTTTAGTGAGGGTTGGAAAGAGTTTGTGGAGTATTACTCTCTTGCCTATGGGCACCTATTGGTTTTCAGATATGATGGAACATCTCATTTTCATGTACTCATATGTGGTCTGAGTACCTTGGAAATAGACTACCCTTTCAACAAGGTAGATCCTAAAAGGGCCAACAATAATGAACTTCAACCCCTTAAGATGTGTAGAACAAGTGGAAACAACAAAGATGAGAGTAATTCCAATATGCTGGACTGCAAAGGTATGTTGAAGAATCCAAGTGCAAAGAAGAAAAACGTTAACCAGCATACTAAATTGTCATCCATCAGTGATTGTGATGAAACTGCTGGCAATATTTCCTTCACGGTGATAATAAAGTCACACCATTTAAAGAGACACTACTTGAATCTGCCAAAGAAATCACTGCAGGGCTACATCAAACCTGGTGGGCGAAATGTTACTCTGCTGGTTGGGGACAAATCATGGAGGGTTAATTTGATCCATTTCACAAGCAGTTCAGTGACTTGCTTTTCTGCAGGTTGGTCAACATTTGCAAGGGAAAATAATCTAGAAGAAGGAGATGCTTGCTTGTTTGAGCTGCTAAATATTATTGATGACATGGTGGTGAAGGTTTCCATTTCTAAACGTTCCTCTATTAAGTCATAA 1191 0.4081 MDGLCNLVRKAVGAAIVQCADPLISLPKKGSLVVYILQVHFEQVQDFLVTAYNIPTLFCRVLDPQKCFYFSTLSGDKTKPMLLFAIGQHSQHKAHLCVLRMLAMISEPNHGDGFYGDGASKPVHFFRIMYPETLLEGMLRIPGKFVRKYGKCLSNTMFLKLPNGAEWKVSVENRDGGVWFSEGWKEFVEYYSLAYGHLLVFRYDGTSHFHVLICGLSTLEIDYPFNKVDPKRANNNELQPLKMCRTSGNNKDESNSNMLDCKGMLKNPSAKKKNVNQHTKLSSISDCDETAGNISFTVIIKSHHLKRHYLNLPKKSLQGYIKPGGRNVTLLVGDKSWRVNLIHFTSSSVTCFSAGWSTFARENNLEEGDACLFELLNIIDDMVVKVSISKRSSIKS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01428 396 Gene3D - 118 217 IPR015300 -
Rops8g01428 396 CDD B3_DNA 296 386 IPR003340 GO:0003677
Rops8g01428 396 ProSiteProfiles B3 DNA-binding domain profile. 295 392 IPR003340 GO:0003677
Rops8g01428 396 SMART B3_2 296 392 IPR003340 GO:0003677
Rops8g01428 396 SMART B3_2 125 217 IPR003340 GO:0003677
Rops8g01428 396 PANTHER B3 DOMAIN-CONTAINING 120 376 - -
Rops8g01428 396 Pfam B3 DNA binding domain 126 214 IPR003340 GO:0003677
Rops8g01428 396 Pfam B3 DNA binding domain 296 383 IPR003340 GO:0003677
Rops8g01428 396 SUPERFAMILY DNA-binding pseudobarrel domain 293 379 IPR015300 -
Rops8g01428 396 CDD B3_DNA 124 214 IPR003340 GO:0003677
Rops8g01428 396 Gene3D - 269 393 IPR015300 -
Rops8g01428 396 SUPERFAMILY DNA-binding pseudobarrel domain 120 215 IPR015300 -
Rops8g01428 396 ProSiteProfiles B3 DNA-binding domain profile. 124 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01428 Rops-Chr8 31816796 31821197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01428 205 387 B3 DNA Binding Superfamily AT3G18990 25.806 3.26e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01428 B3 1.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01428 - - aprc:113849508 355.14