Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01415 ATGGAAAGTGATGCTCGAGAGAACTTCTTTGGCACATCTTCCTCCTCATCATCATCATCAACAACAACAACAACAGCACCAACATCTTCTACCTTGGACTCAACTTCATGCACCAAGCTAGACTCCAAAAAAAGTGCCCCCACAAAAGCTCAAAACTCAGAAAATGGCAACGAGTGCAAGAAAAGGCAGAGAAGTGACAATGACAGCACACACCCCACTTACAGAGGTGTAAGAATGAGAACATGGGGAAAATGGGTGTCTGAGATTCGTGAACCAAGAAAGAAGTCAAGAATATGGCTTGGAACTTACCCTACTGCAGAAATGGCAGCTAGAGCCCATGATGTAGCAGCTTTAGCTATCAAAGGCCATTCAGCTTACCTCAATTTCCCTAATTTGGCTCAAGATCTTCCAAGTCCTGTCAGCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAGCCACTGTCTTTTCAAAGGTTAAGCATTATCAAGCTGAAGCTGAACAAAACCAAGCAGAACAAGCTTCATCTTCAATTCAATCCATGGACAATACTCAAGAGTCTTCAAGTTCTCCCTCTACTACAGATGATGATGAAACACTGTTTGATCTACCAGATCTTTTCCCTGAGGGAAACAATGGACTTTTCTCCTATTCTTCTTCTTGGCATTTATATGCTGTTGATAGTGGTTTCAGGCTTGAGGAGCAACTTTTGTGGGAGAAATACTAG 735 0.4299 MESDARENFFGTSSSSSSSSTTTTTAPTSSTLDSTSCTKLDSKKSAPTKAQNSENGNECKKRQRSDNDSTHPTYRGVRMRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQDLPSPVSTSPKDIQAAAAKAAATVFSKVKHYQAEAEQNQAEQASSSIQSMDNTQESSSSPSTTDDDETLFDLPDLFPEGNNGLFSYSSSWHLYAVDSGFRLEEQLLWEKY* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01415 244 Pfam AP2 domain 72 123 IPR001471 GO:0003700|GO:0006355
Rops8g01415 244 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Rops8g01415 244 MobiDBLite consensus disorder prediction 1 54 - -
Rops8g01415 244 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Rops8g01415 244 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Rops8g01415 244 Coils Coil 167 187 - -
Rops8g01415 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 47 212 - -
Rops8g01415 244 MobiDBLite consensus disorder prediction 169 200 - -
Rops8g01415 244 FunFam Ethylene-responsive transcription factor 2 73 131 - -
Rops8g01415 244 MobiDBLite consensus disorder prediction 1 75 - -
Rops8g01415 244 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Rops8g01415 244 MobiDBLite consensus disorder prediction 55 73 - -
Rops8g01415 244 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Rops8g01415 244 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Rops8g01415 244 MobiDBLite consensus disorder prediction 169 206 - -
Rops8g01415 244 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01415 Rops-Chr8 31525546 31526621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01415 61 240 AP2-EREBP Transcription Factor Family AT2G44940 51.942 1.89e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g01415 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01415 - - pvu:PHAVU_008G141000g 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01415 8 31525546 31526621 Rops8g01415 8 31525546 31526621 ECH