Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01414 ATGGGGAGTATGGGTGACTCAGACAGAAAACGACGTCACTTTAGCTCCTTGTCTCCTACACCTGCAGCTGCTACTGCCAAGAAGCTACCATTCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAATCAAAAGCTTACGCAGAAATTAGAAACTCAGAAGTTAGAATATGCAGCTCTCGAGAATAAATTCTCTCAACTGAAGGAGAGGCAACAGTCGTATGATTGCACTTCAGCGGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTGATGATTTAGAATTGTGTTCTGAACGCACAAGAGAGTGTAGCTCCAAATCAGATTCCAGAGTTGCATCAATCACAGATGATGCTAGTTCATCCACTGTTCAGGATGTTTTTCTTAGCCGACTTCTGCAAACTGGTGCAACTGAAAGTTCCTCCACATATCACTTTGCAAACCAGATAGAAGAGCGTAGGGAAATTACAACAGATAAAGCTAAAAGCATTTTAAAAAATATTGTGACATCTATTAATAACTTTTGGTGTCTGAAGGATGGGCTGTATACTGCATTACTGAAAAAGCTTCCAGGAGATGTTTCATGCAGGCAGAAGTTGTCCATTGATCTAGAGGTGGAAGTTAAAAACTTGAGATCAGCATTTAGTGAACTTCACTTGAATCACAAGTCTTTAGCAAGTGAGTTCCAAATTCGGAGAGATCTTGATGCCAAAAATAAAGCTCACCTTAAAAGATTAAAAGGGGAACTAGAAAGCACTGTTGCAGAGTTAGAAGAAAGCAACCACAAACTTGCAACTCTCAAGGCAGAGAATGATGCGGCAAAAGGGGCAGTTCTCCCAGTGTTAAATGTTGGAAGTACGCACGTTCCTAGTGATAAGATCAGAGACAAGCATAAGGATTTGCAAGATATGGAATCTGTTTTGACGGAGCTATTGGACCAAGGTTCAACTAGATTAGTGGAACTGAAAAGTCTTCATGAGGAAAGAATACGAATATTGCAGCAGTTGTGTGATCTACAGAACACATTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCATTCCAATTGGTTAGAGATCAGATAGAAAAATCGAAATCTGAAGTTCGGGAGTATCAGGCCTTATACGGGAAACTACAGGTTGAGAAGGATAATCTTGCATGGAGGGAAAGGGAGTGGTACATTAAAAATGATTTAGCTGATGTTTTTCATAGATCTGTGGTAGTTTCAGACTTGAGAGTTGCTGATATACGCACTGAGATACAGAAAAAGATTGAGGAAAGAAAGGTGATTGAAAACAAGCTGAAAGAGGAAGCAAGAGAACCAGGAAGGAAACAAATTATTGCAGAATTTAAGTCTCTGCTTTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTCAACTAAGTAAGTATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCGGATGTGCAGTCTATTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGTATTATCTGTTAGGTCTGCTGGTCAACTTGCTGAGACAAAGAGGCTGCATGCTGTGGTTAAAGATTTGAGGGAGAGTGAGCAGGACTTGAAGTTGATACTGGAAATGTTTAGACGTGAGTCCATTGATTCGAGGGATGTCATGGAAGCAAGGGAAGCAGAATACCGGGCTTGGGCAGGTGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTGGAACTTCGAGTTAAGACAGCAAATGAAGCAGAGGCCAGATCTCAACAAAAGCTGGCTGCTGCTGAAGCTGAGATAGCAGATATGAGAAAGAAATTCGAAGATTCTAAAAGGGAAATGTGTAAACTGTCTGATGTCTTGAGATCTAAAAATGAAGAAAATGAGGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGGTTACTGATTTAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCAAGACAAGAGCAGGATTCTTTGATCATGGAGAAACGGGTAATGGAACAAGAGATCCAGCAAGCAAATGTATCAGTGAATTTTTATGATATGAAAGCTGCAAGAATTGAAGATCAGTTGAGGGTTTGTTCAGATCAGATTCAAAGAATTACAGAGGATAAGCTTCAAACTTCTGCTGCTTTGGAAAATACAGGAAGAAAGTTGTCAGATATTAGATCATCTCAACAGGTTAGGGATGCAGTGGTGGAAGTGCAATCTAAAATTGGTAGTAGTCGAGTGACTCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTCACCAAAAAGAGAGTAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTGTCATGCCTTAAAGCACAGAATGAGGGTTCCTCAGTAACTGAAAAGCTTCAACAGGAACTGGGAGAGTATAGGGAAATTGTTAAGTGCAGTATCTGCCAAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACTCCTGTATCCAGAAAGTTGCTGGGAGTAGGCACCGCAAATGTCCACAGTGTGGTACAAGCTTCGGGGCTAATGATGTTAAGCCTGTTTATTTGTAA 2640 0.4023 MGSMGDSDRKRRHFSSLSPTPAAATAKKLPFLPISEDKKLDIAVLQYQNQKLTQKLETQKLEYAALENKFSQLKERQQSYDCTSAVVKKSWEQLVDDLELCSERTRECSSKSDSRVASITDDASSSTVQDVFLSRLLQTGATESSSTYHFANQIEERREITTDKAKSILKNIVTSINNFWCLKDGLYTALLKKLPGDVSCRQKLSIDLEVEVKNLRSAFSELHLNHKSLASEFQIRRDLDAKNKAHLKRLKGELESTVAELEESNHKLATLKAENDAAKGAVLPVLNVGSTHVPSDKIRDKHKDLQDMESVLTELLDQGSTRLVELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVRDQIEKSKSEVREYQALYGKLQVEKDNLAWREREWYIKNDLADVFHRSVVVSDLRVADIRTEIQKKIEERKVIENKLKEEAREPGRKQIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDIHSLRADVQSISSILDRKVKECDVLSVRSAGQLAETKRLHAVVKDLRESEQDLKLILEMFRRESIDSRDVMEAREAEYRAWAGVQSLKSSLDEHNLELRVKTANEAEARSQQKLAAAEAEIADMRKKFEDSKREMCKLSDVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLQQVTDLDDYNIKLVLEGVRARQEQDSLIMEKRVMEQEIQQANVSVNFYDMKAARIEDQLRVCSDQIQRITEDKLQTSAALENTGRKLSDIRSSQQVRDAVVEVQSKIGSSRVTRMELQVELEKERFTKKRVEEDLEVARRKLSCLKAQNEGSSVTEKLQQELGEYREIVKCSICQDRTKEVVITKCYHLFCNSCIQKVAGSRHRKCPQCGTSFGANDVKPVYL* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01414 879 CDD RING-HC_Bre1-like 820 877 - -
Rops8g01414 879 Coils Coil 418 445 - -
Rops8g01414 879 MobiDBLite consensus disorder prediction 1 15 - -
Rops8g01414 879 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g01414 879 Coils Coil 708 728 - -
Rops8g01414 879 Pfam Zinc finger, C3HC4 type (RING finger) 825 867 - -
Rops8g01414 879 Coils Coil 366 386 - -
Rops8g01414 879 FunFam E3 ubiquitin protein ligase 808 879 - -
Rops8g01414 879 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Rops8g01414 879 Coils Coil 770 804 - -
Rops8g01414 879 Coils Coil 244 281 - -
Rops8g01414 879 SUPERFAMILY RING/U-box 819 878 - -
Rops8g01414 879 Coils Coil 42 76 - -
Rops8g01414 879 SMART ring_2 827 865 IPR001841 -
Rops8g01414 879 Coils Coil 582 616 - -
Rops8g01414 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Rops8g01414 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Rops8g01414 879 PANTHER RING FINGER PROTEIN-RELATED 1 879 IPR013956 GO:0004842|GO:0010390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01414 Rops-Chr8 31478855 31503270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01414 809 878 C3H Transcription Factor Family AT2G42030 33.784 1.76e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01414 K10696 - gmx:100790337 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01414 8 31478855 31503270 Rops8g01414 8 31478855 31503270 ECH