Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01411 ATGGCTTCTAAACTTAACCATGGAGATGGCTTTGATGGTGATGGTGCATCAGAGCCAATCCACTTTATGAGAATCATACTCCCTGAAACTCTTTCACAAGGAAAGCTGAGGATTCCAGAAAAGTTTGTGAGGAAATATGGAAAACACTTGTCCAACACAGTATTTCTTGTTCTTCCAAATGGTGCAAAATGGGAAGTAAATGTGGAGAAACGTGATAATGGGGTTTGGTTTCATAAAGGATGGAAGGAGTTTGCGGAGTATTACTCTCTAGCTCATGGGCACTTATTGGTTTTCAGATATGATGGAACACCCCATTTTCATGTGCGCATCTGTGGTCTGAATGCCATGGAGATAAACTACCCTCCAAACAAGGTAGATCATAAAAGAGGCAACAGTGAACTTCAACCATGTAAGACGCTGAGAGTAAATGGAAATAACAAAGATAAGAATAATTCCAATTTGCAGGACTGCAAAGGCAAAGGTATATTGAAGAATCCCAGTGAAGAGAAGAATAACATAGGCCAACGTACTAAAAGGTCATCATCCATTGCTAACTGTGGTGAAGCTGCTGGCAATACTTCGTTCACAGTGATAATAAAGGCACGCCACTTAACGAAATACTTGTACCTGCCAAAGGGATCACTGAAGGGTTACATCAAACGTGGTGGACAAAACGTTAAGCTGCTTGTTGGGGACAACTCATGGAGGATTAATTTGATCCATTACCCAAACCATTCATTCACTTTCCTTTCTGCAGGTTGGTTAAGATTTGCAAGGGAAAACAACTTGGAAGTAGGAGATGCTTGCTCCTTCAAGCTGCAAAATAGTAGTGATGAGGTGGAGATGAAGGTTTCCATTTCTAAATGTTCCTCTGTTAAATCATAA 885 0.4056 MASKLNHGDGFDGDGASEPIHFMRIILPETLSQGKLRIPEKFVRKYGKHLSNTVFLVLPNGAKWEVNVEKRDNGVWFHKGWKEFAEYYSLAHGHLLVFRYDGTPHFHVRICGLNAMEINYPPNKVDHKRGNSELQPCKTLRVNGNNKDKNNSNLQDCKGKGILKNPSEEKNNIGQRTKRSSSIANCGEAAGNTSFTVIIKARHLTKYLYLPKGSLKGYIKRGGQNVKLLVGDNSWRINLIHYPNHSFTFLSAGWLRFARENNLEVGDACSFKLQNSSDEVEMKVSISKCSSVKS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01411 294 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Rops8g01411 294 MobiDBLite consensus disorder prediction 144 179 - -
Rops8g01411 294 CDD B3_DNA 194 288 IPR003340 GO:0003677
Rops8g01411 294 Pfam B3 DNA binding domain 204 286 IPR003340 GO:0003677
Rops8g01411 294 Pfam B3 DNA binding domain 28 111 IPR003340 GO:0003677
Rops8g01411 294 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Rops8g01411 294 Gene3D - 16 115 IPR015300 -
Rops8g01411 294 PANTHER B3 DOMAIN-CONTAINING 18 274 - -
Rops8g01411 294 SMART B3_2 22 114 IPR003340 GO:0003677
Rops8g01411 294 SMART B3_2 195 290 IPR003340 GO:0003677
Rops8g01411 294 SUPERFAMILY DNA-binding pseudobarrel domain 191 287 IPR015300 -
Rops8g01411 294 MobiDBLite consensus disorder prediction 144 158 - -
Rops8g01411 294 Gene3D - 168 291 IPR015300 -
Rops8g01411 294 ProSiteProfiles B3 DNA-binding domain profile. 193 290 IPR003340 GO:0003677
Rops8g01411 294 CDD B3_DNA 21 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01411 Rops-Chr8 31414197 31415443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01411 121 285 B3 DNA Binding Superfamily AT3G18990 23.977 5.03e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01411 B3 4.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01411 - - aprc:113849508 331.257