Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01410 ATGACTTCTAAATCTAACCATGGAGATGGCTTCAATGGTGATGATGCATCAAAGCCAATCCACTTTTTCAGAATCATACTCCCTGAAATCCTTTCACAAGGAAAGCTGAGGATTCCAGAAAAGTTTGTGGGGAAATATGGAAAACACTTGTCCAACCCAGTATTTCTTGTACTTCCAAACGGTGCAAAATGGGAAGTAAATGTGGAGAAAGGTGAAAATGGAGTTTGGTTTCATGAAGGTTGGAAGGAGTTTGTGGAGTATTACTCTCTAGCTCAAGGACACCTATTGGTTTTCAGATATGATGGAACATCTCATTTTCATGTGTTCATATGCGGTCTGAGTGCCATGGAAATAGACTACCCTCTAAATAAGGTAGATCGTAAAATGGCCAACAATAGTGAACTTCAACCATGTAGGACGCGGAGAGCAAATGGAAACAACAAAGATGAGAGTAATTCCAATTTGCAGGACTACAAAGGCAAAGGAATGTTGAAGAATCAAAGTGAAGAGAAGAAGAACATTAACCAGCATACTAAAAGGTCATCCATTAGTGATTGTGGTGGAGTTGCTGGCAATATTTCCTTCATGGTGATAATGAAATCATGCTACTCGAAGTGGAACTTGAACCTGTCAAACGAATCACTGAAGGATTACATCAAATCCGGTGAACAAAATGTTAAGCTGCTTGTTGGGGACAAATCATGGAGAGTTAAATTGTTCCATTACCCAAACAAGGCAACCACTTGCTTTTCTGCAGGTTGGTCAAAATTTGCAAGGGAAAACAATTTAGAAGAAGGAGATGCTTGCTTGTTTGAGCTGCTAAATAATAGTGATGACATGGTGATGAATGTTTCCATTTCTAAACGCTCCTTTGTTAAGAAAGCATTGGCCTAA 894 0.3926 MTSKSNHGDGFNGDDASKPIHFFRIILPEILSQGKLRIPEKFVGKYGKHLSNPVFLVLPNGAKWEVNVEKGENGVWFHEGWKEFVEYYSLAQGHLLVFRYDGTSHFHVFICGLSAMEIDYPLNKVDRKMANNSELQPCRTRRANGNNKDESNSNLQDYKGKGMLKNQSEEKKNINQHTKRSSISDCGGVAGNISFMVIMKSCYSKWNLNLSNESLKDYIKSGEQNVKLLVGDKSWRVKLFHYPNKATTCFSAGWSKFARENNLEEGDACLFELLNNSDDMVMNVSISKRSFVKKALA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01410 297 Pfam B3 DNA binding domain 201 288 IPR003340 GO:0003677
Rops8g01410 297 Pfam B3 DNA binding domain 28 111 IPR003340 GO:0003677
Rops8g01410 297 CDD B3_DNA 194 288 IPR003340 GO:0003677
Rops8g01410 297 SUPERFAMILY DNA-binding pseudobarrel domain 192 288 IPR015300 -
Rops8g01410 297 MobiDBLite consensus disorder prediction 131 160 - -
Rops8g01410 297 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Rops8g01410 297 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Rops8g01410 297 Gene3D - 167 290 IPR015300 -
Rops8g01410 297 ProSiteProfiles B3 DNA-binding domain profile. 233 290 IPR003340 GO:0003677
Rops8g01410 297 Gene3D - 15 114 IPR015300 -
Rops8g01410 297 SMART B3_2 195 287 IPR003340 GO:0003677
Rops8g01410 297 SMART B3_2 22 114 IPR003340 GO:0003677
Rops8g01410 297 CDD B3_DNA 21 111 IPR003340 GO:0003677
Rops8g01410 297 PANTHER B3 DOMAIN-CONTAINING 17 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01410 Rops-Chr8 31395572 31396767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01410 102 285 B3 DNA Binding Superfamily AT3G18990 24.084 1.15e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01410 B3 1.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01410 - - aprc:113849508 370.933