Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01401 ATGGCCAAAAGGTTGTTGTGGTTAGGTGTGTGTGAGGAGATTTGCATCTCTGGTGGACTCGTAAGGCAGAAAATGAAGTACACGCGTTTTCTCCGAAAGCGTATGAACACAAAGCCCTCTTATGGTTCCATTCATTTTCGTGCCCCTTCCAAGATCTTCTGGCGCACCGTTCGTGGAATGATTCCACATAAGACTAAGCGTGGGGAAGCTGCTCTTGCTCGATTGAAGGTTTATGAGGATGGGGCATGGGCTCGGGGAGCTACAAAAACTGGTACAACTGGGCGTGGTGCAAAGGCTGGTGGTACGGGTAGGGTTAATTCAGGGGCACGAGCATCAACTACGGGAAAGAAAGGCAATGTTTCTGGAAAGTCTAGCAAGACAGATACAGCTAATGGTGATGCTGAAGACAGTAAGTCAAAAAAGGGGCAATATGAAGGTCCCGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTGTTGGAAACCTCTCCTGGAGTGCGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCGGTTGCTACTGAATGTGGGACCACTTTCTTTAAGGTATCTTCTGCTGCTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCCAGGGGGGCATCTGGAGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATACTTCCACAAATGAAGATGGTAGCCGTAAAATTGTAATGGTCTTAGCAGCTACTAACTTCCCATGGGACATGAGGCACTAA 987 0.465 MAKRLLWLGVCEEICISGGLVRQKMKYTRFLRKRMNTKPSYGSIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEDGAWARGATKTGTTGRGAKAGGTGRVNSGARASTTGKKGNVSGKSSKTDTANGDAEDSKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFKVSSAALASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDMRH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01401 328 MobiDBLite consensus disorder prediction 86 147 - -
Rops8g01401 328 FunFam Katanin p60 ATPase-containing subunit A1 163 328 - -
Rops8g01401 328 MobiDBLite consensus disorder prediction 129 147 - -
Rops8g01401 328 MobiDBLite consensus disorder prediction 106 128 - -
Rops8g01401 328 Pfam Ribosomal protein L13 11 80 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g01401 328 ProSitePatterns Ribosomal protein L13 signature. 57 80 IPR023563 GO:0003735|GO:0005840|GO:0006412
Rops8g01401 328 Pfam ATPase family associated with various cellular activities (AAA) 205 325 IPR003959 GO:0005524|GO:0016887
Rops8g01401 328 CDD Ribosomal_L13 11 80 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g01401 328 SMART AAA_5 201 320 IPR003593 GO:0016887
Rops8g01401 328 SUPERFAMILY Ribosomal protein L13 11 84 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops8g01401 328 Gene3D Ribosomal protein L13 10 91 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops8g01401 328 PANTHER AAA DOMAIN-CONTAINING 108 326 - -
Rops8g01401 328 Gene3D - 164 326 IPR027417 -
Rops8g01401 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01401 Rops-Chr8 31183642 31186029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01401 11 79 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 92.754 3.22e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01401 K07767 - zju:112489859 431.795