Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01399 ATGGACTTTGGAGGGAACATGTCCTGTCTTAGCAACAGAGAACAAAACAGTAACAGTAACGGTAACAGTAACAGTAACGGTGACAGTTTTGGTTGGAATTCATGGGAAACCACTACTTCTAATGGTTTCAGACTCATCAACACATTTCACACTTCCGTTAACAATAACCATACTGGTCTACCAAACCCTCTCATGTTTCTCCCTCAAAATACACCTATTACCCATAGTGACGGCGGCCTAGAACAACAGCATCGCCGCCACCGGCAGCAACTTCCGCCGGCTTATGGCGGAGATGGCTCCCATATGCACCCGGACCCACACCTCACGTGTTTGAAACTTGGCAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAAGTGGAAGTGGAAGTGGCGGTGGTGGTGGTGGTGTTGGGTTGGGAGATAAGAGAGGTAAAGGCTACTATGGTGGTGGTGGTGTGAAAACGGCACCGTTCGCGGCGGCTACGGTGCCGAGATGTCAGGTGGAAGGGTGCCACGTGGCACTGTTGAACGCCAAGGACTATCACAGAAGGCACAAGGTTTGTGAGATGCATTCCAAGGCACCAAAAGTTGTGGTGTTAGGGATGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGAAGACTGGCAGGTCACAATGAGCGAAGAAGAAAGAGCTCCCATGATTCTGTTGTAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGGAGTGATTCTTGGGTTTCTCCTGCTGATCTCTCCATAAGATGCAGTGCTGCTTTACGTGAATTGATAGCAGAAAACCGGGCAGCCATCATGGCAAGGCAGGTTGTTTCAGAAAGGGACTGGAATTTGCACCACCACCATGCAGTGGAAGACTTCAAGGAGATCCAACCTGAATCCAATTATTTCCCACAACACATGTTTCCCCAGACACAGTAA 1002 0.488 MDFGGNMSCLSNREQNSNSNGNSNSNGDSFGWNSWETTTSNGFRLINTFHTSVNNNHTGLPNPLMFLPQNTPITHSDGGLEQQHRRHRQQLPPAYGGDGSHMHPDPHLTCLKLGKRHYFEDASGSGSGSGSGGGGGGVGLGDKRGKGYYGGGGVKTAPFAAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVVRNSSQGGCALSLLSSRSDSWVSPADLSIRCSAALRELIAENRAAIMARQVVSERDWNLHHHHAVEDFKEIQPESNYFPQHMFPQTQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01399 333 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g01399 333 Pfam SBP domain 167 240 IPR004333 GO:0003677
Rops8g01399 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 265 IPR044817 GO:0003677
Rops8g01399 333 Gene3D - 159 228 IPR036893 GO:0003677|GO:0005634
Rops8g01399 333 MobiDBLite consensus disorder prediction 8 26 - -
Rops8g01399 333 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Rops8g01399 333 FunFam Squamosa promoter-binding-like protein 14 159 228 - -
Rops8g01399 333 MobiDBLite consensus disorder prediction 69 103 - -
Rops8g01399 333 MobiDBLite consensus disorder prediction 231 250 - -
Rops8g01399 333 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01399 Rops-Chr8 31125637 31131017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01399 110 240 SBP-box Gene Family AT1G27370 51.908 3.86e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops8g01399 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01399 - - gmx:100806582 424.861