Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01398 ATGTTGGAGTATTCATGGGGAAACCCATCAACGATAATCCTAACTGGAAATGAAGGTGGTGCCACCACAGAGCCCGATGAAACCCACCGTCAAATATTGGAACACAACTACACCTTGCTACCTAACACCACTGCTTTCTCTAATCACCAACACTTTAACCCGCCACAAATGCAACAGCACCACCCCTTCTTCGACCCACGCTCCTTCACTGGCGCGTCCTTTACCTCTTTCTCACCTTCACCATCATCCATGCTCTCCCTTGACCCAACCCCACCCATCAACAGAGCCCATTGCATGTTTGGGCTTGGACACGGGCTTGGGCTCGGGCTCGGGCTCGGGCTCGGGCTCAACTACTTTACATCCTCCAACGATAACATCATGAATGGACTCTACCCTCGGTGTAAGTCGGTAGGAGAGTCGAATTCCTCGGTTTTGTCGAACACGCCACGGTGTCAAGTAGAGGGATGCAATATGGACCTTTCTGAAGCGAAGCACTATCATCGTCGTCACAAGGTGTGTGAGTTTCACTCGAAGGCGCCAACAGTGATTGCTGCTGGGTTGACTCAGCGATTCTGCCAGCAATGTAGCAGGTTCCATCTTCTTTCAGAATTTGATAATGGAAAACGTAGCTGCAGGAAAAGACTAGCTGATCATAATCGTCGCAGAAGAAAAATACAGCAACCTACTCAAGAAACCCAGAAATCTCAGCCTACTTCGGATAATGTTGCAGCTGGATCCTCGCTGAACTCCGAAGTTCAATCATCATCATCGGTGACAGTGACAGTGTCACCGCCAGATTTTTTCGGACAAAGGCAAAATCAAAATAGAGGCTCTTTAACATCATCAGGGTCATTGTTTTACTCAAGCGGTTTTCACTGCTGGGAGTTGGACCCCCTTTCTTTGGATTTCCTGGAAATAGTGCCTGTTTGGTACTCACAGCAGCTAAGCACGGGTGTTTCAGGCTACGGCCTAGACAAGTGGACCCCTTTCCTTTTAGGGCATTGA 1005 0.4886 MLEYSWGNPSTIILTGNEGGATTEPDETHRQILEHNYTLLPNTTAFSNHQHFNPPQMQQHHPFFDPRSFTGASFTSFSPSPSSMLSLDPTPPINRAHCMFGLGHGLGLGLGLGLGLNYFTSSNDNIMNGLYPRCKSVGESNSSVLSNTPRCQVEGCNMDLSEAKHYHRRHKVCEFHSKAPTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKIQQPTQETQKSQPTSDNVAAGSSLNSEVQSSSSVTVTVSPPDFFGQRQNQNRGSLTSSGSLFYSSGFHCWELDPLSLDFLEIVPVWYSQQLSTGVSGYGLDKWTPFLLGH* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01398 334 MobiDBLite consensus disorder prediction 229 258 - -
Rops8g01398 334 MobiDBLite consensus disorder prediction 215 258 - -
Rops8g01398 334 FunFam Squamosa promoter-binding-like protein 14 142 212 - -
Rops8g01398 334 SUPERFAMILY SBT domain 149 228 IPR036893 GO:0003677|GO:0005634
Rops8g01398 334 Pfam SBP domain 151 224 IPR004333 GO:0003677
Rops8g01398 334 Gene3D - 142 212 IPR036893 GO:0003677|GO:0005634
Rops8g01398 334 ProSiteProfiles Zinc finger SBP-type profile. 148 225 IPR004333 GO:0003677
Rops8g01398 334 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 280 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01398 Rops-Chr8 31058386 31061766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01398 1 198 SBP-box Gene Family AT1G02065 37.551 2.04e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops8g01398 SBP 2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01398 8 31058386 31061766 Rops8g01398 8 31058386 31061766 ECH