Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01393 ATGAGCCAGTGTGTTCCCAGTTGGGATGTCGATGACAACACACCAGCCCCAAGAATCTCTCTTCGTTCCAACACCAATTCAGCTGCCCCTGATGTCCCCATGTTAAACTATGATATTGCAGAACTGACATGGGAAAATGGACAACTTTCCATGCATGGGTTAGGGATGCCGCGAGTGCCGGTAAAACCCTCTACAACCGCCGCTAATACCCCTACAAAGGACACATGGGAGAAGCCTCGTGCAAGTGGCACCTTAGAATCCATTGTAAACCAAGCCGCTAGCTTACCTCACCGTGGCAAATCATCTTTTGCTGGCGATGGTGGTGGTGGTGGTGACAGTGGTGGTGGTCTCTATGGTAACTTCTTAGTCCCATGGCTCAACCCTCACCGTGCTGCCACCATAGCTGCCGCCACCGCCTCGAACAACATGACCATGGACGCATTGGTGCCGTGCTCGAATCGAACGACGGAGGAGAAGAGCAACCTCCACCAGGAGATGGATTCCATTCCCGGAGGGGTTGGAACGTGCATGGTGGGATGTTCCACACGTGTGGGGTCTAGTAGCGGCACCGCCACGGCTACCCAGGAGGAAGGCGCGCTACTGGCTGCGGCGGCGAAGCGTGCGAGGGTGGCTCATGTGCCGTCGAATAGCAGGGATCAGAGTGTGAGTGGCAGCACCACGTTTGGGAGGCAAAGCCGGCACGTGACAGTTGACACGTGCGACAGGGAAATTGGCGTGGGTTTCACTTCCGCTTCCATAGGGTCGCTGGAAAACACAAGCTCTGACAAGCAGGGGACCAAGACCACCACCGGAGACGACCACGATTCTGTTTGCCACAGTAGACCAACGAGGGAGGAGGGGGAGGAGAACGAGAAAAAGAAAGAAAATCGAAAATCTTCGGTGTCCACTAAAAGGAGCAGAGCTGCAGCAATCCACAACCAATCTGAAAGGAAACGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCCATGATGTTGCCAATGACCTTGCAACAACAACTTCAAATGTCTATGATGACTCCAATGGGCATGGGGATGGGGATGGGTATGGGCATGGGCATGGGAATGGGGATGGGGATGGGGATAGACATGAACTCCATGGGTAGAGGTAACATCCCTGGCATGCCTCCAGTGCTCCACCCTTCTGCCTTCATGCCTATGGCCTCATGGGATGCCACCACTGGTGACAGACTTCAAGGGCCTCCTCCAGGCACAGTGATGCCTGACCCTATGTCAACATTCTTTGGATGCCAATCACAGCCCATGACCATGGATGCATACAGTAGGATGGCTGCCATGTATCAGCAGTTGCACCAACCTCCAGCATCTGGTTCGAAGAGTTGA 1485 0.5259 MSQCVPSWDVDDNTPAPRISLRSNTNSAAPDVPMLNYDIAELTWENGQLSMHGLGMPRVPVKPSTTAANTPTKDTWEKPRASGTLESIVNQAASLPHRGKSSFAGDGGGGGDSGGGLYGNFLVPWLNPHRAATIAAATASNNMTMDALVPCSNRTTEEKSNLHQEMDSIPGGVGTCMVGCSTRVGSSSGTATATQEEGALLAAAAKRARVAHVPSNSRDQSVSGSTTFGRQSRHVTVDTCDREIGVGFTSASIGSLENTSSDKQGTKTTTGDDHDSVCHSRPTREEGEENEKKKENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPMTLQQQLQMSMMTPMGMGMGMGMGMGMGMGMGMGIDMNSMGRGNIPGMPPVLHPSAFMPMASWDATTGDRLQGPPPGTVMPDPMSTFFGCQSQPMTMDAYSRMAAMYQQLHQPPASGSKS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01393 494 MobiDBLite consensus disorder prediction 211 235 - -
Rops8g01393 494 MobiDBLite consensus disorder prediction 1 27 - -
Rops8g01393 494 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 492 IPR031066 -
Rops8g01393 494 SMART finulus 313 362 IPR011598 GO:0046983
Rops8g01393 494 MobiDBLite consensus disorder prediction 267 302 - -
Rops8g01393 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 356 IPR011598 GO:0046983
Rops8g01393 494 MobiDBLite consensus disorder prediction 253 324 - -
Rops8g01393 494 CDD bHLH_AtPIF_like 307 368 IPR047265 -
Rops8g01393 494 MobiDBLite consensus disorder prediction 214 234 - -
Rops8g01393 494 Pfam Helix-loop-helix DNA-binding domain 312 357 IPR011598 GO:0046983
Rops8g01393 494 Gene3D - 302 368 IPR036638 GO:0046983
Rops8g01393 494 MobiDBLite consensus disorder prediction 310 324 - -
Rops8g01393 494 Coils Coil 313 333 - -
Rops8g01393 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 379 IPR036638 GO:0046983
Rops8g01393 494 FunFam transcription factor UNE10 isoform X1 302 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01393 Rops-Chr8 30714576 30720160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01393 1 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 47.718 5.58e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g01393 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01393 - - gmx:100798775 601.282