Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01388 ATGGATCCTTATGTGATCCTCACTTATCGGGCACAGGAGCACAGAAGCAGCGTAGCTAAAGGTGCAGGATCTAATCCTCGTTGGAACGAAAGCTTCCTATTCACAGTTTCTGACAGTGTTTCTGAACTTCATCTGAAGCTAATGGACAAAGATACATTTACCCAGGATGACTTCCTTGGTGAGGCAAAAATCAATTTGGAACCGGTGTTTGTTGAGGGAAGCATCCCAGAGACTGCTTATAATGTTGTGAAGGAACAAAACTACTGTGGGGAGATTGTGGTGGCTCTCACCTTTAATCCTGAGAGAGGCAGTGAATTTAGCTACGGCGAAGAGGAAGGCCAGATTGGTGGATGGAGAGAATCAGTCCCAAATTACTAG 378 0.4524 MDPYVILTYRAQEHRSSVAKGAGSNPRWNESFLFTVSDSVSELHLKLMDKDTFTQDDFLGEAKINLEPVFVEGSIPETAYNVVKEQNYCGEIVVALTFNPERGSEFSYGEEEGQIGGWRESVPNY* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01388 125 ProSiteProfiles C2 domain profile. 1 79 IPR000008 -
Rops8g01388 125 SMART C2_3c 2 78 IPR000008 -
Rops8g01388 125 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 101 IPR035892 -
Rops8g01388 125 Gene3D C2 domain 1 101 IPR035892 -
Rops8g01388 125 Pfam C2 domain 1 75 IPR000008 -
Rops8g01388 125 PANTHER C2 DOMAIN-CONTAINING 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01388 Rops-Chr8 30579205 30580559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01388 2 70 C2H2 Transcription Factor Family AT4G21160 40.580 1.71e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01388 - - gmx:100814819 191.815