Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops8g01388 | ATGGATCCTTATGTGATCCTCACTTATCGGGCACAGGAGCACAGAAGCAGCGTAGCTAAAGGTGCAGGATCTAATCCTCGTTGGAACGAAAGCTTCCTATTCACAGTTTCTGACAGTGTTTCTGAACTTCATCTGAAGCTAATGGACAAAGATACATTTACCCAGGATGACTTCCTTGGTGAGGCAAAAATCAATTTGGAACCGGTGTTTGTTGAGGGAAGCATCCCAGAGACTGCTTATAATGTTGTGAAGGAACAAAACTACTGTGGGGAGATTGTGGTGGCTCTCACCTTTAATCCTGAGAGAGGCAGTGAATTTAGCTACGGCGAAGAGGAAGGCCAGATTGGTGGATGGAGAGAATCAGTCCCAAATTACTAG | 378 | 0.4524 | MDPYVILTYRAQEHRSSVAKGAGSNPRWNESFLFTVSDSVSELHLKLMDKDTFTQDDFLGEAKINLEPVFVEGSIPETAYNVVKEQNYCGEIVVALTFNPERGSEFSYGEEEGQIGGWRESVPNY* | 126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops8g01388 | 125 | ProSiteProfiles | C2 domain profile. | 1 | 79 | IPR000008 | - | |
| Rops8g01388 | 125 | SMART | C2_3c | 2 | 78 | IPR000008 | - | |
| Rops8g01388 | 125 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 101 | IPR035892 | - | |
| Rops8g01388 | 125 | Gene3D | C2 domain | 1 | 101 | IPR035892 | - | |
| Rops8g01388 | 125 | Pfam | C2 domain | 1 | 75 | IPR000008 | - | |
| Rops8g01388 | 125 | PANTHER | C2 DOMAIN-CONTAINING | 1 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops8g01388 | Rops-Chr8 | 30579205 | 30580559 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops8g01388 | 2 | 70 | C2H2 Transcription Factor Family | AT4G21160 | 40.580 | 1.71e-13 | 63.5 |