Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01383 ATGGAAAAACACAAGTGCAAGCTTTGCTTTAGGAGCTTCTCCAATGGCAGAGCTTTGGGTGGTCACATGAGGTCTCACATGATGAACCTTGCTCTTACAAAGCCAGAAGAAGAGTCATCACGAACCATACAACTCAGTTTCGAAGCTGAATCAGCTCCATCTTCATCATCATCTTCTGAAGATGAAGGTAATGATGGTGATAAGGGTCTTTCTTATGGCCTAAGAGAAAATCCAAAGAGGAGCATTCGCCTTGTAGATCCTGAATTTTCTTTTGCTCCTACAGATACTGGGTCTGTCATTCTTCAAGATAGAGAGAGTGAGACAGAGTCATCTAAGAACAACCCAACTCGTAGAAGATCCAAAAGGACATGGAAATTTGGTGTCTTTGATTACAAATACCACCATCACAACAACAAACAAGTTCAAGTTCATGATCGTGAAGCCATGATGAAAAGGTTAAAATTATACAAACCTAGTAACACAGAATCATGGGTGGACCATGAACCTGTTAGTTCTGTTTCCGATGCAACTACAGAGGAAGATGTTGCATTTTGTCTCATGATGTTGTCTAGGGACAAATGGAAGAGACAAAAGGATCAACAACAATTGTTGGATGATCAAGATGAAGAAGAACAAGAAGAGGAAGATGATGATGAAGATGAAGATGATGAAGCCGAACGTTCCTTGGAAGATAGTGATGAATCTCAGGAGATGATGAAACTGTCAAAGAACCGAACACGACGAGGAAGGTACAAATGTGAGACATGTAACAAAGTGTTTCGATCTTATCAAGCATTAGGTGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGAACATAACAGTGGATGAACCAGAATTTGAGCGTGGGACCCGTGGAAATTTTGCTCCCATGGTTGTGGAAAAGAAAAGTCATGAGTGCCCAGTTTGTTTTAGAGTCTTTGCTTCGGGTCAAGCACTCGGTGGACACAAGAGAACCCATGTTACTGGATCAGTTCCAAGTTCCTCAAAGTTTGGAAACAGCTTGATAGATCTTAACCTCCCTGCTCCAATTGATGATGATGATATTAGCCAAATAGAGAACTCTGCAGTTTCAGACGCAGAATTTGTCAAAACCCATTAG 1122 0.4127 MEKHKCKLCFRSFSNGRALGGHMRSHMMNLALTKPEEESSRTIQLSFEAESAPSSSSSSEDEGNDGDKGLSYGLRENPKRSIRLVDPEFSFAPTDTGSVILQDRESETESSKNNPTRRRSKRTWKFGVFDYKYHHHNNKQVQVHDREAMMKRLKLYKPSNTESWVDHEPVSSVSDATTEEDVAFCLMMLSRDKWKRQKDQQQLLDDQDEEEQEEEDDDEDEDDEAERSLEDSDESQEMMKLSKNRTRRGRYKCETCNKVFRSYQALGGHRASHKKIKVNITVDEPEFERGTRGNFAPMVVEKKSHECPVCFRVFASGQALGGHKRTHVTGSVPSSSKFGNSLIDLNLPAPIDDDDISQIENSAVSDAEFVKTH* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01383 373 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Rops8g01383 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Rops8g01383 373 MobiDBLite consensus disorder prediction 93 119 - -
Rops8g01383 373 ProSitePatterns Zinc finger C2H2 type domain signature. 307 327 IPR013087 -
Rops8g01383 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 327 IPR013087 -
Rops8g01383 373 MobiDBLite consensus disorder prediction 61 75 - -
Rops8g01383 373 MobiDBLite consensus disorder prediction 35 60 - -
Rops8g01383 373 Gene3D Classic Zinc Finger 248 327 - -
Rops8g01383 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Rops8g01383 373 MobiDBLite consensus disorder prediction 34 75 - -
Rops8g01383 373 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Rops8g01383 373 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 372 IPR044303 GO:0006355
Rops8g01383 373 SUPERFAMILY beta-beta-alpha zinc fingers 250 327 IPR036236 -
Rops8g01383 373 SMART c2h2final6 305 327 IPR013087 -
Rops8g01383 373 SMART c2h2final6 251 273 IPR013087 -
Rops8g01383 373 SMART c2h2final6 4 26 IPR013087 -
Rops8g01383 373 Pfam C2H2-type zinc finger 250 275 - -
Rops8g01383 373 Pfam C2H2-type zinc finger 305 327 - -
Rops8g01383 373 Pfam C2H2-type zinc finger 4 27 - -
Rops8g01383 373 MobiDBLite consensus disorder prediction 198 245 - -
Rops8g01383 373 MobiDBLite consensus disorder prediction 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01383 Rops-Chr8 30457865 30458986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01383 1 359 C2H2 Transcription Factor Family AT3G60580 42.021 3.35e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g01383 zf-C2H2_6 4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01383 - - vra:106780254 460.685