Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01376 ATGAATGAGAACTTGGGAAGAGCACATCAAAAGCTCAGATCTTGTTTCTCTTTCATTTTCACCACAAATTTCCCACCTGTTTGCTCTTGCTTCGAACTTGCAGCGGTTGATTTAGATGAAGGCCATTCGTTGTTAGTACCACAGCAAGAGCAATTTCTGCAAAGGTGGAACACCCTCAGGGAAAACTGTTGCTATGGGGGCATTGAGCCCACCTACCCAAGCCCCCCAACATCTTCCTCTACACTGTCTTCCTCACACGGCAGCGGCGGCGGCGGTGGCTGCGGCTCGACGGATAGCACCACCGGCGTGGCGGCGAAGGTCTCAGGTGAAAAGGAGAACAACCCACCCCAAGCAGGGTTAGAAGTTGGCCAGGGAAGATGTGGCATGGGAATGGAGGATTGGGAGAGTGTGTTGTCTGAGTCACCAGGTCAAGATCATTCCGTTCTTAAATTGATTATGGGGGACATTGAGGACCCATCTGTGGGATTAAGCAAGCTTTTACAGGGTGGAAGTGGTTCTCATGATGTTGGATTTAATGGGAATGGAGGGGGGTTTAGTTTGGTGGATCAAAGTTCTGTGCTTGACCCTATTTCTGGTCTCAACTTTGTGAGCAGCATTGACCCTTCTTCTGGTCTTGGGAATTGTTCTGATTTCCCTTTCAATACCCACAACAATGTTAACTCCAATGTTGTTAGAGTAGTTTCTGGTGTGAATCCAAACCCTGTGTTCCCTGCTTCAGCTAGCAATTTCTCACCAGTTTCACTCCCTCAGGGTGTGTTTCAGCCACAACAGCAACAACGGCATCAGCCCTTAGAGTCTCTTGATGAGAAGCTGCAAGTTTTGAATCCCCAGTTCATTTTGAACCACAACCAAACACAGTTTATGCCCAACCCAGGTTTGGTCTTGCCTTTGACATATGCTCAGGTGCAAGAACATCATCAGCTTCACCCTCAGCCTCCGGCCAAACGCCTGAATTGTGGACCAAACTATCAGGTTCCAAAGACACCCTTTTTGGATTCTGGCCAAGAGCTGTTTCTTCGGAGGCAGCAGCAGCAGCAGCTTCAACTGCTTCCACACCATCTGCAGCAGAGGCCATCATCCATGGTGGTGGCACCAAAGCAGAAAATGGTGAACCCCGGCGGCGGCGAAGACTTGGCAACCCATCAGCTTCAACAGGCCATAATTGACCAGCTTTACAAGGCTGCAGAGCTGATCGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAGCCTTTTCAGAGGGCTGCTTTTTATTTCAAGGATGCCTTGCAATTACTTCTCCATTCAAATGCCAACAAGAGTTCTTTGACCTTCTCACCAACTGGCTTATTGCTCAAGATTGGTGCTTACAAATCATTCTCAGAAATCTCACCAGTTCTGCAGTTTGCCAATTTCACTTGTAACCAAGCACTGCTTGAAGCTGTGGAAGGGTTTGACCGCATTCATATAATTGATTTTGATATTGGCTTTGGTGGACAGTGGTCTTCCTTCATGCAAGAGTTAGCACTTAGGAATGGTGCCGCACCTGCACTCAAGATTACTGCATTTGTGTCACCTTCTCACCATGATGAAATTGAGCTGAGTTTCACTCATGAGAATTTGAAGCAATATGCTGGTGAAATTAACATGTCCTTTGAGCTTGAGATTCTGACCCTTGAATCTTTAAATTCTGCTTGCTGGCCCCAGCCACTTCATGATTGCGAAGCTGTTGCGGTTAACTTGCCTATCAGCTCTTTCTCAAATTACCCTGCACATCTTCCTCTAGTCCTTCGGCAGCTCATGCCCAAAATTGTGGTTACATTGGATAGAAGTTGTGATCGACCTGATGCACCATTTCCTCAGCATCTGATATTTGCACTCCAGTCTTATTCAGCACTACTTGAGTCACTTGATGCTGTTAATGTTAATCCAGATGTCCTTCAGATGATTGAGAAGTATTATCTTCAGCCTGCAATGGAGAAACTTGTTTTGGGTCGTCAGTGTATGCAGGAAAGAGCACTTCCTTGGAAAAACCTGCTCTTATCATCTGGGTTCTCACCAATGACATTTAGTAATTTCACAGAGTCCCAAGCAGAGTGTTTGGTGCAGAGGACTCCTGGTAGGGGATTCCACGTGGAGAAGAGGCAGTCTTCCCTTGTTCTGTGCTGGCAAAGGAAGGATCTCATCTCAGTTTCAACCTGGAGATGCTGA 2247 0.4726 MNENLGRAHQKLRSCFSFIFTTNFPPVCSCFELAAVDLDEGHSLLVPQQEQFLQRWNTLRENCCYGGIEPTYPSPPTSSSTLSSSHGSGGGGGCGSTDSTTGVAAKVSGEKENNPPQAGLEVGQGRCGMGMEDWESVLSESPGQDHSVLKLIMGDIEDPSVGLSKLLQGGSGSHDVGFNGNGGGFSLVDQSSVLDPISGLNFVSSIDPSSGLGNCSDFPFNTHNNVNSNVVRVVSGVNPNPVFPASASNFSPVSLPQGVFQPQQQQRHQPLESLDEKLQVLNPQFILNHNQTQFMPNPGLVLPLTYAQVQEHHQLHPQPPAKRLNCGPNYQVPKTPFLDSGQELFLRRQQQQQLQLLPHHLQQRPSSMVVAPKQKMVNPGGGEDLATHQLQQAIIDQLYKAAELIDAGNPELAHGILARLNHQLSPIGKPFQRAAFYFKDALQLLLHSNANKSSLTFSPTGLLLKIGAYKSFSEISPVLQFANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGAAPALKITAFVSPSHHDEIELSFTHENLKQYAGEINMSFELEILTLESLNSACWPQPLHDCEAVAVNLPISSFSNYPAHLPLVLRQLMPKIVVTLDRSCDRPDAPFPQHLIFALQSYSALLESLDAVNVNPDVLQMIEKYYLQPAMEKLVLGRQCMQERALPWKNLLLSSGFSPMTFSNFTESQAECLVQRTPGRGFHVEKRQSSLVLCWQRKDLISVSTWRC* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01376 748 ProSiteProfiles GRAS family profile. 385 747 IPR005202 -
Rops8g01376 748 MobiDBLite consensus disorder prediction 70 125 - -
Rops8g01376 748 Pfam GRAS domain family 395 747 IPR005202 -
Rops8g01376 748 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 355 743 IPR005202 -
Rops8g01376 748 MobiDBLite consensus disorder prediction 72 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01376 Rops-Chr8 30126842 30129631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01376 360 748 GRAS Transcription Factor Family AT4G00150 55.860 5.12e-138 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops8g01376 GRAS 8.4e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01376 - - gmx:100805945 1082.01