Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01349 ATGGCATCATTTTGCTTACTAATATCGCTTCTAATTGTTCCCTTTCTATTCTCCTCTATTGTTTCTGGTAACTTATTGAGTGACATCAAATCATGGTGCAGCCAAACCCCATACCCTCAACCATGTGAGTACTTCTTGAGCAATAAAGCTTTTACAAAACCCATAAAAAACAAGTCAGATTTCTTCAAACGTTCCCTAGAACTCACTATAGAGAGAGCACTAAAAGGCCATGTAAACACTCTCTCACTAGGCCCAAAGTGCAGAAACTCAAGTGAAAAACTTGCATGGGCTGATTGCCTTGAGCTATACCAATACACCATCCAGAAGATCAACAAAACCTTGGACCCTAACAAAAACTGCTCACGAGATGATATGCAAACATGGCTCAGCACAGCTCTAACCAACCTCGAGACATGCAAAGTTGGGTTCTACGAACTAGGGGTTCCAGACTATGTGTTACCCTTGATGTCCAACAATGTTACTAAGTTATTGTGCAACACCTTGGCTCTCAACAAGGTTCCTTACAAAGAACCAAGTTATGATGCAGGTGGGTTTCCAACATGGGTCAAACATGGTGACCGGAAGCTGTTGCAGTCATCTTCTTCTTCTTCTCCAGGTTCAAAGGCCAATGTTGTCGTGGCTAAAGATGGGTCTGGCAAATTTACAACAGTGAAGGAAGCTGTGGATGATGCACCAAAGAGGGGAAGTGAAAGATATGTGATATATATAAAGGAAGGTGTGTACAATGAACATGTTGAGGTGAAACAAAAGAATATCATGTTGGTGGGAGATGGTATTGGGAAGACGATTATCACCGGTGGCAGAAGCGTTCGAGGGGGCACCACAACCTACCGTTCTGCGACTTTTGATCTAGACCCAAGTTCTGTTAAGGCATATCTTGGAAGGCCTTGGCAAAAGTACTCTAGAACAGTTTTCATGACAACTTCTCTTGATAGTTTGATTCATCCAGCAGGTTGGAAGGAATGGGATGGTGACTTTGGCTTAGACACCTTGTATTATGCAGAATATGAAAACACAGGTCCAGGTTCCTCTACTGAGAATCGTGTCAAATGGAAGGGTTACCATGTTCTTAACAGTGCATCTGAGGCCACACCTTTCACTGTGGGGAACTTTATTGATGGTGATTCATGGATATCTGAAACTGGTGTTCCTTTCTCCTCTGGTCTTTAA 1191 0.4265 MASFCLLISLLIVPFLFSSIVSGNLLSDIKSWCSQTPYPQPCEYFLSNKAFTKPIKNKSDFFKRSLELTIERALKGHVNTLSLGPKCRNSSEKLAWADCLELYQYTIQKINKTLDPNKNCSRDDMQTWLSTALTNLETCKVGFYELGVPDYVLPLMSNNVTKLLCNTLALNKVPYKEPSYDAGGFPTWVKHGDRKLLQSSSSSSPGSKANVVVAKDGSGKFTTVKEAVDDAPKRGSERYVIYIKEGVYNEHVEVKQKNIMLVGDGIGKTIITGGRSVRGGTTTYRSATFDLDPSSVKAYLGRPWQKYSRTVFMTTSLDSLIHPAGWKEWDGDFGLDTLYYAEYENTGPGSSTENRVKWKGYHVLNSASEATPFTVGNFIDGDSWISETGVPFSSGL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01349 396 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Rops8g01349 396 SMART PMEI_2 24 170 IPR006501 GO:0004857
Rops8g01349 396 Pfam Pectinesterase 210 290 IPR000070 GO:0030599|GO:0042545
Rops8g01349 396 Pfam Pectinesterase 294 382 IPR000070 GO:0030599|GO:0042545
Rops8g01349 396 CDD PMEI-like_3 31 172 - -
Rops8g01349 396 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 173 IPR035513 -
Rops8g01349 396 PANTHER PECTINESTERASE 11 290 - -
Rops8g01349 396 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Rops8g01349 396 Gene3D - 295 396 IPR012334 -
Rops8g01349 396 Gene3D - 206 294 IPR012334 -
Rops8g01349 396 NCBIfam pectinesterase inhibitor domain 3 173 IPR006501 GO:0004857
Rops8g01349 396 SUPERFAMILY Pectin lyase-like 205 395 IPR011050 -
Rops8g01349 396 Pfam Plant invertase/pectin methylesterase inhibitor 28 170 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01349 Rops-Chr8 29415367 29419269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01349 286 396 Carbohydrate Esterase AT2G45220 64.602 1.44e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01349 K01051 - gmx:100782892 397.127