Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01348 ATGGACCACCAAGCCTACTTCATCACAGCACAAGGAAGAGATGATCCTAATAAACCCATTGGGATTTCAATCCAGAGGTGCCAGGTTAAGCCTGCATCTGATTTTGATGCTTCAAAGGACTGCATGATCAAGAGCTACTTAGGCAGGCCTTGGAAAGAGTACTCTAGGGCTATGCTTCTGAAGACAGATTTAGATGGATTGATTGACCCAAAGGGATGGGCATTGTACTATGGAGAGTATATAAACACAGGAAGTGGTGCCTCTACCCAGTATAGGGTGAACTGGCCTGGTTTTCATGTGCTGAATACTGATAATGAGGCCACACCCTTCACTGTGAGTCAGCTTTTGCAAGGAGAGCAGTGGATTCCAGTTACTGGTGTGCCATTCTGGTCTGGAATTTAA 402 0.4552 MDHQAYFITAQGRDDPNKPIGISIQRCQVKPASDFDASKDCMIKSYLGRPWKEYSRAMLLKTDLDGLIDPKGWALYYGEYINTGSGASTQYRVNWPGFHVLNTDNEATPFTVSQLLQGEQWIPVTGVPFWSGI* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01348 133 SUPERFAMILY Pectin lyase-like 2 132 IPR011050 -
Rops8g01348 133 Gene3D - 1 133 IPR012334 -
Rops8g01348 133 PANTHER PECTINESTERASE 1 123 - -
Rops8g01348 133 Pfam Pectinesterase 1 119 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01348 Rops-Chr8 29377047 29378743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01348 1 133 Carbohydrate Esterase AT3G60730 58.741 5.80e-56 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01348 K01051 - gmx:100810741 226.483