Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01347 ATGGCACGCCTCAACCACACAATCATAGTCATTTTCCTCTTTATCTTTTTTTCAAGTCTTGCACCAGTTGAGCCATCGTTGGCCAGGCATAACCCCGAAACCCAAACCCAAAACAAAACCCAAACAAGAGCCTACATAGAGTCATCTTGCCAAGGCACAAGATACCCTGATCTATGCATTCGTAGCCTAGCCACATTTGCCAAATATTCCACCATAAATAGCCCTGACCAATTAGCCCATGTAGCCCTTTCTGTGAGCCTCACCAAGGCACTACAAACAAGGGGTTACTTGTTGAAAGTGGCCAAAGAACTTGAGCAAGTCAAGGATGCTAGGGTGTACCTAACTGTGCAAGATTGTATGAATCAAATAGCTGATAGTGCGGACCAACTTAGCCAAGCCATCAAAGAGCTTCGCAGGCTGAACAAAGGCACCACTATTGATGATAACCTCTTGTGGCACATAAGCAACGTTGAGACATGGGTAGGCACTGCTGAAACAGAAGCTAGCTATTGTGCACAATCGTTCCCTGGTCATAGGATGAGTAAGAGAACTGCTACAATAAAGGGTAAGGTACAAAATGTTGCAGAGGTCACTAGTAATGCACTGGCTTTGTTTCATGGATATTCTGCTAAGTATAAAGCAGCGGCAGCGGCAGCTAGAGCTGGCAAGAAACCTTAA 678 0.4513 MARLNHTIIVIFLFIFFSSLAPVEPSLARHNPETQTQNKTQTRAYIESSCQGTRYPDLCIRSLATFAKYSTINSPDQLAHVALSVSLTKALQTRGYLLKVAKELEQVKDARVYLTVQDCMNQIADSADQLSQAIKELRRLNKGTTIDDNLLWHISNVETWVGTAETEASYCAQSFPGHRMSKRTATIKGKVQNVAEVTSNALALFHGYSAKYKAAAAAARAGKKP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01347 225 SMART PMEI_2 41 204 IPR006501 GO:0004857
Rops8g01347 225 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 207 IPR035513 -
Rops8g01347 225 NCBIfam pectinesterase inhibitor domain 11 208 IPR006501 GO:0004857
Rops8g01347 225 Coils Coil 120 140 - -
Rops8g01347 225 Pfam Plant invertase/pectin methylesterase inhibitor 45 204 IPR006501 GO:0004857
Rops8g01347 225 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 206 IPR035513 -
Rops8g01347 225 CDD PMEI-like_3 48 209 - -
Rops8g01347 225 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 204 - -
Rops8g01347 225 FunFam Pectinesterase inhibitor 3 41 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01347 Rops-Chr8 29374128 29374805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01347 42 205 Carbohydrate Esterase AT3G14310 27.381 1.68e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01347 - - tpra:123890145 281.567