Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01342 ATGCCTACTGAACTAGGAAGGTTAAGGAAGCTCAGTGTTCTTGCACTTCAATATAATCACTTAAGTAGTGCAATTCCTGCAAGTTTGGGTGAACTGGAAACATTACAACGATTGAATATGAGCTTCAATAGCCTTTTTGGTCCTATTCCAGTGACATTGGCTAATGCACCTAAACTGGAGAGTCTGGATATTCGAAACAATTCTCTCTCTGGCCATGTCCCAATAGCTCTAAAAGCACTGAAAAGTGGGTTCCAGTACATCAACAATCCAGGTTTATGTGGGAATGAGTTTGCCAATTTAGGTTCTTGTAAAGCAGTAAGCAATTCAGACCCGGTTAGACCTGAATCATATGAACCTAGTAATTTTTCTATCAGTGATCTTCCAGCATCAGTTGAACCAGAAGCTCAAAACTGCGGTAATGTTAATTGTAAAAAGCCACCAGAATCTTCCAAAAAAATTTTTATTTTTGGGGTGATTGAAGTTATTGTTGCTTCCACTGTTTTGGGACTTTCTGTGCTTTTATGGTACCATCGTCGGAAACAGAAAATTGGAAGCACTGCTGAAATTTCTGATTGCCGGCTTAGTACTGACCGGATAATGGAAGTATGCAGGAAAAGAGCATCTCCTCTTCTAAGTTTAGAGTATTCCAATGGATGGGATCCCTTAGCCAAAGGTCGAGGTGGTTATTCCCAGGAATTTCTTGAGAGCTTAATGTTCAATCTTGAAGAAGTAGAACGTGCAACTCAGTGCTTCTCAGAGATAAATTTGTTGGGGAAGAGTAATTTTTCAGCTAAGTACAGGGGAATCTTGAGAGATGGATCTATTGTGGTTGTAAATTGCATTGCAAAGACAAGTCGCAAGTCCGATGAAACTGAATTCTTGAAAGGTTTGAAGATATTGAGCTCATTAAAGCATGAAAATCTAGTTCGGTTTAGAGGCTTTTGCTGTTCAAAAGGCCAGGGAATGCTTTCGATCTATGATTTTGTCTCAAATGGGAGTTTGTTACAATATCTTGATGTTAAGAGAGGCAATGCTAAGGTGATGGTGTGTATGGTGATTGCTGAAATTGAGGATAAGATGGCTGAGAGGTGTGTGGATGTGGCTGATGAGATGGTGGGTAGGGTTGAGAGGTGTGTGGATGTGGCTGATGAGATGGTTGGTAGGGCTGAGACTGTGGATATGGATGAGATGGTTGGTAGGGCTGAGACTGTGGATATGGCTGAGATGGTTGGTAGGGTTGAGATGGTGGATATGGCTGAGATGGTGGATATGGCTGGGATGGTGGACTCCATTGAAGAGGTTGCTTTGAAAAAGCATCTTCGTTGTGTCAAAACAACAAAGAATCATAGGTCTGTTCAGAAAGTTCACAAACCAAGATATTTAAGTGATGATGAGAAGAGGAAGCTGTTGCAGAATTTGAGGGCCAGGGTTGATAAGATTAGTAGATTGTGTAAGGTTTCTGAAAATGAAGAAGATTTAGAGCCTGAGGATGGCATTCATACCAATGTCATTGCCGGAGAGGGACACTAG 1530 0.4124 MPTELGRLRKLSVLALQYNHLSSAIPASLGELETLQRLNMSFNSLFGPIPVTLANAPKLESLDIRNNSLSGHVPIALKALKSGFQYINNPGLCGNEFANLGSCKAVSNSDPVRPESYEPSNFSISDLPASVEPEAQNCGNVNCKKPPESSKKIFIFGVIEVIVASTVLGLSVLLWYHRRKQKIGSTAEISDCRLSTDRIMEVCRKRASPLLSLEYSNGWDPLAKGRGGYSQEFLESLMFNLEEVERATQCFSEINLLGKSNFSAKYRGILRDGSIVVVNCIAKTSRKSDETEFLKGLKILSSLKHENLVRFRGFCCSKGQGMLSIYDFVSNGSLLQYLDVKRGNAKVMVCMVIAEIEDKMAERCVDVADEMVGRVERCVDVADEMVGRAETVDMDEMVGRAETVDMAEMVGRVEMVDMAEMVDMAGMVDSIEEVALKKHLRCVKTTKNHRSVQKVHKPRYLSDDEKRKLLQNLRARVDKISRLCKVSENEEDLEPEDGIHTNVIAGEGH* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01342 509 SUPERFAMILY L domain-like 2 83 - -
Rops8g01342 509 Gene3D Ribonuclease Inhibitor 1 105 IPR032675 -
Rops8g01342 509 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 99 - -
Rops8g01342 509 ProSiteProfiles Protein kinase domain profile. 251 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01342 509 Coils Coil 470 490 - -
Rops8g01342 509 FunFam Protein NSP-INTERACTING KINASE 2 223 328 - -
Rops8g01342 509 Gene3D Phosphorylase Kinase; domain 1 228 328 - -
Rops8g01342 509 PANTHER LEUCINE RICH REPEAT KINASE 2 2 340 - -
Rops8g01342 509 Pfam Leucine rich repeat 9 69 IPR001611 GO:0005515
Rops8g01342 509 Pfam Protein tyrosine and serine/threonine kinase 255 350 IPR001245 GO:0004672|GO:0006468
Rops8g01342 509 SUPERFAMILY Protein kinase-like (PK-like) 231 344 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01342 Rops-Chr8 29229365 29242408 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01342 5 81 Miscellaneous Gene Families AT4G22730 35.065 3.65e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Rops8g01342 PK_Tyr_Ser-Thr 6.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01342 - - var:108327466 465.307