Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01340 ATGGCCATCAAAGACTCTCTTGACCCTGAAAACCGTGTGTTGACCTCGTGGACCCCACATTCTGAACCATGCAGTGGTGCTTTTGAAGGTGTGGCTTGCAATGAGCAAGGTCTTGTTACCAATATTTCACTGCAGGCAAAGGGTCTATCAGGGAAGATACCTGTAGCCATTGCTGGTCTTAAGAGCTTGACTGGTCTGTATCTTCACTTCAATGCTTTGAATGGGATGTTACCAAAGGAGATTACAGGTTTGACTGAGCTAAGTGATTTGTATCTCAATGTGAATAATCTCTCTGGTGATATCCCTCGTGAGATTGGAAACATGTCAAATATTCAAGTTTTGCAGCTTTGTTATAACCAGCTTACTGGGACTATACCTACTGAACTAGGAAGGTTAAGGAAGCTCAGTGTTCTTGCACTTCAATATAATCACTTAAGTAGTGCAATTCCGGCAAGTTTGGGTGAACTGGAAACATTACAACGATTGAATCTGAGCTTCAATAGCCTTTTTGGTCCTATTCCAGTGACATTGGCTAATGCACCTAAACTGGAGAGTCTGGATATTCGAAACAATTCTCTCTCGGGCCATGTCCCAATAGCTCTAAAAGCACTGAAAAGTGGGTTCCAGTACATCAACAATCCTGGTTTATGTGGGAATGAGTTTGCCAATTTAGGTTCTTGTAAAGCAGTAAGCAATTCAGACCCGGTTAGACCTGAATCATATGAACCTAGTAATTTTTCTATCAGTGATCTTCCAGCATCAGTTGAACCAGAAGCTCAAAACTGCGGTGATGTTAATTGTAAAAAGCCATCAGAATCTTCCAAAATTTGTTTTATTTTTGGGGTGATTGGAGTTATTGTTGCTTCCACTGTTTCGGGACTTTTTGTGCTTTTATGGTACCATCGTCGGAAACAGAAAATTGGAAGCACTGGTGAAATTTCTGATGGCCGGCTTAGTACTGACCGGATCAAGGAAGTATGCAGGAAAAGAGCATATCCTCTTCTAAGTTTAGAGTATTCCAATGGATGGGATCCCTTAGCCAAAGGTCGAGGTGGTTATTCCCAGGAATTTCTTGAGAGCTTAATGTTCAATCTTGAAGAAGTAGAACGTGCAACTCAGTGCTTCTCAGAGATAAATTTGTTGGGGAAGAGTAATTTTTCAGCTAAGTACAGGGGAATCTTGAGAGATGGATCTATTGTGGTTGTAAATTGCATTGCAAAGACAAGCTGCAAGTCTGATGAAACTGAATTCTTGAAAGGTTTGAAGATATTGAGCTCATTAAAGCATGAAAATCTAGTTCGGTTTAGAGGCTTTTGCTGTTCAAAAGGCCAGGGGGAATGCTTTCTGATCTATGATTTTGTCTCAAATGGGAGTTTGTTACAGTATCTTGATGTTAAGAGAGGCAATGCTAAGGTACTTGAATGGTCCACCAGAGTATCCATCATCCATGGTATTGCCAAGGGTATTGGTTATCTGCATGGAAAGAAAGGAACCAAACATGCTCTAGTTCACCAGAATATATCAGCTGAAAAAGTACTCCTAGATGCACGGTATAATTCCTTGCTTGCAGATTCAGGATTGCACAAACTCCTAGCAGATGATGTTGGTTTTTCCACCCTCAAAGCCAGTGCAGCCATGGGATATCTGGCCCCAGAATACACAACAACTGGTCGTTTGACTGAAAAGAGTGACGTGTATGCATTTGGGGTGATAGTTTTCCAGCTTCTCACTGGAAAACGTGATGTCACTCAGTTAAGTCGCCAAAGGGTAGAAAGTGCTAGTTTTAAAGATATAGTTGATGAGAATCTTGAAGGGAAGTTCTCAGAATTAGAGGCAGCCAAATTGTGGAGAATTGCTTTGCTTTGTACCCTTGAATCTTCCCATCTCAGACCATCTATGGACATTGTAATGCTGGAACTTGGTGATAGACAGTATCAGTTCATGCCATGA 1950 0.4128 MAIKDSLDPENRVLTSWTPHSEPCSGAFEGVACNEQGLVTNISLQAKGLSGKIPVAIAGLKSLTGLYLHFNALNGMLPKEITGLTELSDLYLNVNNLSGDIPREIGNMSNIQVLQLCYNQLTGTIPTELGRLRKLSVLALQYNHLSSAIPASLGELETLQRLNLSFNSLFGPIPVTLANAPKLESLDIRNNSLSGHVPIALKALKSGFQYINNPGLCGNEFANLGSCKAVSNSDPVRPESYEPSNFSISDLPASVEPEAQNCGDVNCKKPSESSKICFIFGVIGVIVASTVSGLFVLLWYHRRKQKIGSTGEISDGRLSTDRIKEVCRKRAYPLLSLEYSNGWDPLAKGRGGYSQEFLESLMFNLEEVERATQCFSEINLLGKSNFSAKYRGILRDGSIVVVNCIAKTSCKSDETEFLKGLKILSSLKHENLVRFRGFCCSKGQGECFLIYDFVSNGSLLQYLDVKRGNAKVLEWSTRVSIIHGIAKGIGYLHGKKGTKHALVHQNISAEKVLLDARYNSLLADSGLHKLLADDVGFSTLKASAAMGYLAPEYTTTGRLTEKSDVYAFGVIVFQLLTGKRDVTQLSRQRVESASFKDIVDENLEGKFSELEAAKLWRIALLCTLESSHLRPSMDIVMLELGDRQYQFMP* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01340 649 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 267 641 - -
Rops8g01340 649 Gene3D Transferase(Phosphotransferase) domain 1 454 647 - -
Rops8g01340 649 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Rops8g01340 649 ProSiteProfiles Protein kinase domain profile. 375 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01340 649 FunFam Protein NSP-INTERACTING KINASE 2 347 453 - -
Rops8g01340 649 Pfam Protein tyrosine and serine/threonine kinase 379 637 IPR001245 GO:0004672|GO:0006468
Rops8g01340 649 Gene3D Phosphorylase Kinase; domain 1 352 453 - -
Rops8g01340 649 FunFam Leucine-rich repeat receptor-like kinase 1 105 - -
Rops8g01340 649 FunFam Protein NSP-INTERACTING KINASE 2 106 228 - -
Rops8g01340 649 Gene3D Ribonuclease Inhibitor 1 148 IPR032675 -
Rops8g01340 649 SUPERFAMILY L domain-like 10 205 - -
Rops8g01340 649 SUPERFAMILY Protein kinase-like (PK-like) 355 640 IPR011009 -
Rops8g01340 649 Gene3D Ribonuclease Inhibitor 149 214 IPR032675 -
Rops8g01340 649 SMART serkin_6 375 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01340 649 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01340 Rops-Chr8 29218028 29221827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01340 1 488 Miscellaneous Gene Families AT4G22730 52.191 4.48e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Rops8g01340 PK_Tyr_Ser-Thr 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01340 - - var:108327466 943.725