Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01339 ATGCGGTCAAGACGCTCTACGAATTTCTTTCCGATGACTGTTGAAGTTCGCAATGATATGGACAAGAAACGTGGCTTTATTCCATGGGATGTGGCGGCTGAATATAAGTTGATGATCGGAAGATCACCCACAATTAGGACAATCGATGGGCAGGAATTTCATGTTCGATTTCTTTTGAGTTTGAAGGAAGGTATGTTTACAAATGGATGGACTTCTTTCATTGAAGCCTATAATTTGAGTGACTACAACAAAATCATCCTCAAGTATTATGGTCAATCTTTCTTTACCTTTGATGAGGGAGACCAACAAAGTTTTCAGAGGACTGGCAATGTAACAAAAAAATTAAAGGTTGAGGAAAATGATGACCACCCTCAAGCCCCGAATGTCGTCTGTCAGATAAAATTGACTCCTTATAGTAGCTCCAATAATCATCAGAATTTGCCCTCGTCTTTCGTTCGATCATGCCTGAATTTGAAATCCCAACAAGTGGTGCTCGAGGTAAAAGGAGGCAGAAAGTGGACGCTGGGTCTTTATACTATAGAGTCCAGGCCTGGAGTAGCTAGGTTTTCATTGGGTTGGAGGACTTTTTGTCGAGACTTGCAGTTGAAGCCAGGGGACATTATCATGTTGAAGGAAGGTCAAGGATCCACCAACCATTTCCTCGCGCACATTGAAAGATTAGGATAA 687 0.4178 MRSRRSTNFFPMTVEVRNDMDKKRGFIPWDVAAEYKLMIGRSPTIRTIDGQEFHVRFLLSLKEGMFTNGWTSFIEAYNLSDYNKIILKYYGQSFFTFDEGDQQSFQRTGNVTKKLKVEENDDHPQAPNVVCQIKLTPYSSSNNHQNLPSSFVRSCLNLKSQQVVLEVKGGRKWTLGLYTIESRPGVARFSLGWRTFCRDLQLKPGDIIMLKEGQGSTNHFLAHIERLG* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01339 228 Gene3D - 110 227 IPR015300 -
Rops8g01339 228 Gene3D - 1 103 IPR015300 -
Rops8g01339 228 SMART B3_2 130 226 IPR003340 GO:0003677
Rops8g01339 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 50 212 IPR039218 -
Rops8g01339 228 SUPERFAMILY DNA-binding pseudobarrel domain 127 224 IPR015300 -
Rops8g01339 228 CDD B3_DNA 135 226 IPR003340 GO:0003677
Rops8g01339 228 ProSiteProfiles B3 DNA-binding domain profile. 130 228 IPR003340 GO:0003677
Rops8g01339 228 Pfam B3 DNA binding domain 133 219 IPR003340 GO:0003677
Rops8g01339 228 SUPERFAMILY DNA-binding pseudobarrel domain 8 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01339 Rops-Chr8 29177541 29178545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01339 92 211 REM Transcription Factor Family AT4G31650 33.594 4.97e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01339 B3 9.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01339 - K11933 csav:115715055 54.299