Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01338 ATGGGTTCTTCCAGCAACTCAAATTCATGGGCACCATATTCTGCTTTAAGGGACTGTTCTCAAGGAATTTGCAGCATCTATTGTCCTCAGTGGTGCTACATCATCTACTCCCCTCCCCCTCCTTCAATCTTACATGGTGATGATGATGACTCTTCAGGCTTTGAATTCTCTCCTCTCATAATAGCTGTCATTGGAATTTTAGCTAGCACTTTCATTTTGGTCACTTACTATACCATTATCTCAAGGTTCTGCAGGCATAGGGGCATAACCAATGACCCAACTTCACAATTAGATCATGAGGATGGTGATGCTGTTAACAATGAATTGGCTCAAGTTTCTTCATCTTCTGGCCTAGATGAGGCTCTTATAAAATCCATCACTGTTTGTAAGTACAATAGAAATGGAGGGTTTGTGGAGGGTGTTGATTGTTCTGTTTGTTTGAGTGAGTTCCAAGAGAATGAAAGTTTGAGATTATTGCCAAAATGTAACCATGCCTTTCATCTACCTTGTATTGATACTTGGCTCAAATCCCATTCAAGTTGTCCCTTGTGCCGTTCCAATATCTCTTCCACCATCAATTCTTGTCCAAATCAAAGAGACCCTCCTGCAATGGAAGCACCCGCAAGCATCAGTGTCAATGCATTGGAATACCAGCAAAGGAGTGATGTTGTTGTGACTATTCAGATTTCTTCTGAGCATCCAAGTTCACAACAAGAAGTGGTGGTTAGTTTAGATGGTGAAGTTCTACCAAAGTTGCCATTGGAAGAAGAAGCTCTTGATGGAGAGAATATAAATAGGCATGAGTTGAATTCTTGTATGAGTCAAAGAAGGGTATCTGTTGCAGACATATTGAATCTAAATGAAGATGATATAGAATTACAGAGGGAGGTATATGATATTGGACCATCAAGAGGAACTGAAGAAGGAAATAAGTGA 936 0.4017 MGSSSNSNSWAPYSALRDCSQGICSIYCPQWCYIIYSPPPPSILHGDDDDSSGFEFSPLIIAVIGILASTFILVTYYTIISRFCRHRGITNDPTSQLDHEDGDAVNNELAQVSSSSGLDEALIKSITVCKYNRNGGFVEGVDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRSNISSTINSCPNQRDPPAMEAPASISVNALEYQQRSDVVVTIQISSEHPSSQQEVVVSLDGEVLPKLPLEEEALDGENINRHELNSCMSQRRVSVADILNLNEDDIELQREVYDIGPSRGTEEGNK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01338 311 CDD RING-H2_EL5-like 142 185 - -
Rops8g01338 311 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Rops8g01338 311 Pfam Ring finger domain 142 185 IPR001841 -
Rops8g01338 311 SMART ring_2 143 184 IPR001841 -
Rops8g01338 311 FunFam RING-H2 finger protein ATL54 118 191 - -
Rops8g01338 311 PANTHER RING-H2 FINGER PROTEIN ATL16 48 241 IPR044600 GO:0016567|GO:0016740
Rops8g01338 311 SUPERFAMILY RING/U-box 137 196 - -
Rops8g01338 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01338 Rops-Chr8 29168625 29169977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01338 1 309 C3H Transcription Factor Family AT3G03550 48.182 2.46e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01338 - - lang:109355345 357.836