Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01336 ATGTTGTTCACCTTGAGGACAAGGTCTTACAGTGTAGTTGCACCTGGAGATACTGTGAACATAATTGGTCAATTTGATGAAGGGGGAATTTATGATATTGATCGTGATAATAATTTTTTGATTATACACCCAGATATTCTGGTGTCTGGAACACGGGTTGCCGCCAGTTTTAGTTGCTCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATCCAATGAGTACTCAACTGCAGCATTAACTGGAACCTTGCTGCACCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAAACTTCTTGGAAGATTACACACAAGTGGTAGTACAGAGAAATATTGAAAGTTTATATGCATGTGGAGTAAATGAAAATGATGTCCACGAAACCATGATTGATGCTATCCCAAGAATATTAAGTTGGATCAAGCTGTTCAAAAATGTGGAGGAAAGACAAGACCCTAATGTTAATTTTGGATGTGATGATGGGCTGAAGAAAGTTGGCATATCTGAGGTAATTGATATTGAAGAAATGGCATGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCATCGGTCAGAGTAAAAGTTCAATCAAGAAAAGATGAACCAGAGGAGAAGATCATGCCGGTAGAGTTCAAAACTGGAAAAACCCCAAATAGCCAGTCATCAGTAGAACATAGTGCCCAAGTAATTTTGTACACTCTCCTAATGTCTGAAAGGTACCAGAAAACTATTGATTCTGGTCTTCTATATTATCTTCAATCAGATCAGACACAGGGCATTGTGGTTCAAAGATCTCACTTAGTTGGACTAATAATGCGACGAAATGAGCTAGCAAGTGAAATTCTTAAGGCATTAACCTTGCAACAACTGCCACCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTCTGTAGCATTTATCATAAGGCACATGGTGGAAGCATAGAGAACAGTGGATTGGGAGATGTGTTTGATTCTCATACTAATCACTTGACATCTTCTCATTTGAAGTTCCTTTGCCATTGGGATCGTTTGATTGACTTAGAAGCTAAAGAAACTGAGCTTTTACGAAAAGAAGTGTGGCGATCACATAGTTTGAAGACTCCAAGCAACAGTGGCCTTTCTTCTATTGTTCTTGATGCTTCAAAAGGAATACCTCATCAGAAATCTCTCGAAGATAATCGTTTCATTTATCATTTTGTACAACAAGATACTTCTTGCCTCTCTAAAGTTTCTGATGGTGATCCCTCTAGTGTCTATTTGAAAAGCGATTTAGATCTTACACTCAGAATTGGAGACCATGTGATATTGAGCAATGAATCTAGCCATCAAACTATTGCAAAAGGGGTGATCTTAGATATTAGTCAGTTCCATGTATCAGTTTCCTTTTCTAAACGCTTACGAATTCCTGGGAGGTCTTCCACTACACATGATCTCCTTCAACAGGTTTGGAGAATTGACAAGGATGAAGTTGTGACTTCATTTGCAATTATGAGGTTCAATCTTGTACAACTTTTTCTACAAAATGATCGAAGCGCTCATCTCCGGAGGATGATTGTTGACCTCGAGGCTCCTAGATTTGACAGTGGCTCTATAGTTAGCCAGGATCCAGCAATATCCTATGTTTGGTCAGAGAAAAGTTTGAATGATGATCAGCGTAGAGCGATTCTCAAGATACTTACGGCAAAAGATTATGCCCTTATATTAGGGATGCCTGGAACAGGGAAGACATCCACCATGGTACATGCGGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTGCTAACAGCCTATACAAATTCTGCTGTCGATAATTTACTCATCAAATTAAAAGCACAGGGCATTGATTTTGTACGTATTGGAAGACATGAAGCAGTGAATGAAGAGGTCAGAGGGCATTGCCTCTCAGCAATGAATGTACAAAGTGTTGATGATATCAAAATAAGGCTAGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTAGGAATTTCTAGTCCCTTGCTTGCCAACATGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCGAGGTTTGTTCTTGTTGGGGATCATTATCAACTACCGCCACTTGTCCAGAGTACAGAGGCCCGAGAGAATGGCATGGGGATGAGTTTGTTTTGTAGGCTCTCAGAAGCACATCCACAGGCAATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGCATCATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAGATAGCTAATGCAAAACTTGAGTTTGCTGGCTTAAAATGTGGACCTTCTTCTCATTGA 2394 0.401 MLFTLRTRSYSVVAPGDTVNIIGQFDEGGIYDIDRDNNFLIIHPDILVSGTRVAASFSCSRRTVLDERLKSNEYSTAALTGTLLHQIFQAGLTNDNPTINFLEDYTQVVVQRNIESLYACGVNENDVHETMIDAIPRILSWIKLFKNVEERQDPNVNFGCDDGLKKVGISEVIDIEEMAWAPKYGLKGMIDASVRVKVQSRKDEPEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQKTIDSGLLYYLQSDQTQGIVVQRSHLVGLIMRRNELASEILKALTLQQLPPMLQSPSICRGCRHLNVCSIYHKAHGGSIENSGLGDVFDSHTNHLTSSHLKFLCHWDRLIDLEAKETELLRKEVWRSHSLKTPSNSGLSSIVLDASKGIPHQKSLEDNRFIYHFVQQDTSCLSKVSDGDPSSVYLKSDLDLTLRIGDHVILSNESSHQTIAKGVILDISQFHVSVSFSKRLRIPGRSSTTHDLLQQVWRIDKDEVVTSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEKSLNDDQRRAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVNEEVRGHCLSAMNVQSVDDIKIRLEQVKVVAVTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFASRFVLVGDHYQLPPLVQSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFAGLKCGPSSH* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01336 797 Pfam AAA domain 659 723 IPR041677 GO:0004386
Rops8g01336 797 Pfam AAA domain 556 648 IPR041677 GO:0004386
Rops8g01336 797 CDD DNA2_N-like 49 282 - -
Rops8g01336 797 Gene3D - 49 313 IPR011604 -
Rops8g01336 797 Pfam DNA replication factor Dna2 11 196 IPR014808 -
Rops8g01336 797 Gene3D - 434 497 - -
Rops8g01336 797 CDD DEXXQc_DNA2 555 755 IPR026851 GO:0017116
Rops8g01336 797 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 652 753 - -
Rops8g01336 797 FunFam DNA replication helicase Dna2 159 313 - -
Rops8g01336 797 Pfam Domain of unknown function DUF83 205 313 IPR022765 -
Rops8g01336 797 Pfam AAA domain 732 780 IPR041679 -
Rops8g01336 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 777 IPR027417 -
Rops8g01336 797 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 498 647 - -
Rops8g01336 797 Gene3D - 498 650 IPR027417 -
Rops8g01336 797 Gene3D - 654 753 IPR027417 -
Rops8g01336 797 PANTHER DNA2/NAM7 HELICASE FAMILY 48 774 IPR045055 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01336 10 697 Core DNA Replication Machinery Family AT1G08840 65.706 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01336 K10742 - gmx:100799415 1305.04