Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01334 ATGTTACCACATGGTAGTTGTGTTGTTGATGATGTCGACGACGATGATGGTGACGGTGACGGAAAGTTGACACCAGTGGAGGAGTCTCCAACGGTGACCCATCGGGTTTTCAGGGAGTTCAAGGTTTCGTTTGAGGAAGTTGTGAATGATCTGTTAGAAGAAGGCACAACAAGGATGGGTGGAGGAAGAGCTCAATTTAGCCACCTAGACACCATAATTACCTTTGAGCTCTTCAAGAAAGTATTGGATGGAGGCTTTAGGAGGGGAAGGAAGGAAGAATGGGAAAGGCGCGAAAGGTTATTATTGTCTCCCAATTTTCCCTCTTCGTTGTCTTCAGCTTTGCATTCGAATTCGACGCATCCAATCCAACAAAAAATTCAAAGAGTGAATCGTGTTTCGTATTTACCATATCCCAAGTGTGAGGGAGAAATGGAACCACCGCAGCCAGCTTCAAGTGGAGCAGAAGCACTTAATCATATCTCACCTGGATCATCAATTTCTATTGCGTATCACCCTCTTTTTGGACCTCATGATGATCTCATCCTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGCATGAAAGGATGGTCTTAAGAGGACAGCCTGACGAGGATGCAGTCCTTTGTACTCAATCCAAAACATATGCCATGAAGTTTGTTGGAAATTCCAATTCTGTTTTGCTTGTACCACCAGCAAATCAATCAGAATATTATGAAAAACTACAAAACAATGATAGTAATAATTATAACGAGAAAGTTGTTGCACCTGTAATCAAAGTTGCACCTGGTAATATGGAGCTCATTGAGGTTGCCCCCAGACTTGATAAACTTAAATTGCTTCTTTCAGAAAACCCTTACAGGTTTGAGGAGTATGACATGGAAAATTCAGAAGAGAATCAGGAATCTAGAAAAGGATTATATAACTGGAATGATCTTACAGACAATATTCAAGCTAGTGATGAGGAATTAAGGTCTGCACTGCAAGCTCTTCCAGCTGTGGAGATTAATGGGTATTGGAGATTAGTAGATGAGAGTTACATGGACATGATTCTGGGAATGCTTTTAAGAAATTCAGTGTTGAATGACTGGTCACTTAATGCTCTAAATGAAGATGAAGTAATGAGTACACTGGAATCAGATGGATTTCCTGGGGTACTTGTTAGCCATTGTTTGCATGTATATGGCCAGAAAGTAAATGATTGCATGCCCAGCTGTGTATGGAAGTTGGATGAGAAGCGGGTATGCGTACACTTTGCAAAAGAAGTCCTTAAAGGAGGTAAGAGGAAGTTAGAGAGTTTTATGGATGAATGGAGGAAGAAGACTCCAGATGGTATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTGACAGAGAGAATTGGGGTTGAGACATGGGTTCGTGCCTTCAGTGTCTCTTCTTTGCCATCTACTCCAGCTGAACGGTTCTCCATTCTTTTCAGAGAGCGGCCAAAATGGGAATGGAAAGATCTGCAGCCCTATATCAGGGATCTGAGTGTACCAGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCACCTGATATGGAACCAGTTTTCAGTGCAAGATAG 1617 0.4212 MLPHGSCVVDDVDDDDGDGDGKLTPVEESPTVTHRVFREFKVSFEEVVNDLLEEGTTRMGGGRAQFSHLDTIITFELFKKVLDGGFRRGRKEEWERRERLLLSPNFPSSLSSALHSNSTHPIQQKIQRVNRVSYLPYPKCEGEMEPPQPASSGAEALNHISPGSSISIAYHPLFGPHDDLILLELDEKLLPDVLHERMVLRGQPDEDAVLCTQSKTYAMKFVGNSNSVLLVPPANQSEYYEKLQNNDSNNYNEKVVAPVIKVAPGNMELIEVAPRLDKLKLLLSENPYRFEEYDMENSEENQESRKGLYNWNDLTDNIQASDEELRSALQALPAVEINGYWRLVDESYMDMILGMLLRNSVLNDWSLNALNEDEVMSTLESDGFPGVLVSHCLHVYGQKVNDCMPSCVWKLDEKRVCVHFAKEVLKGGKRKLESFMDEWRKKTPDGMQPTFDLVEGEVLTERIGVETWVRAFSVSSLPSTPAERFSILFRERPKWEWKDLQPYIRDLSVPGLSSEGLLLKYTRRTQPSPDMEPVFSAR* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01334 538 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 152 538 IPR019128 GO:0007064|GO:0031390
Rops8g01334 538 Pfam Sister chromatid cohesion protein Dcc1 182 504 IPR019128 GO:0007064|GO:0031390
Rops8g01334 538 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01334 Rops-Chr8 29080215 29092616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01334 153 538 C3H Transcription Factor Family AT2G44580 57.398 1.98e-160 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01334 K11271 - gmx:100807595 661.759