Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01333 ATGAGTTGCTTTTATTACTTCAAAGACAAATCCAAGAAGTGGAAGCAAAGATCAGCACCTGAACTGAAAGAGCAAGTGAAATCCCAGTACTCAGAGACTGAAAGAGTCACCAAGTCTTCATGCTCTTCGTATTCATCTCGTAGTATAACAGAATTGTATGAGAAGAAGGCCCACAATTTGCGGATTTTCTCCTTTGTGGAGCTTAGGCGCGCTACAGATGATTTCAATAAGCTTTATAAGATAGGAGAAGGTGGATTTGGGAGTGTATATAAAGGTTCAATCAAATCTGTTGATGGGAATGGTGATCCTATTTTAGTTGCTATCAAAAGGCTTAACCAGAATGGATTACAGGGTCATAAGCAATGGTTGGCTGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAACTCATCGGTTACTGTGCTGTGGATGGTGAAAGAGGAATCCAAAGACTACTTGTATATGAATATATGTCAAATAAAAGCTTAGAATCTCATCTTTTCAATAAAGCATTTGATCCTCTTCCTTGGAAAAGAAGACTTGAGGTAGCACTTGGAGCAGCTCAAGGGTTAGCTTATCTGCATGAGGACTCAGAAACTCAGGTGATATATCGAGATTTTAAATGCTCAAATATATTACTGGATGAAAACTTTAGGCCAAAACTTTCTGATTTTGGTCTTGCGAGGGAGGGGCCAGTAGCTGGGCATACTCATGTTTCAACCGCTGTGATGGGAACATACGGTTATGCTGCTCCAGATTATATTGAGACAGGCCATCTCACTACCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGCTTTATGAAATACTTACAGGAAGGCGTGCAGTGGAGAGAAACCGGCCCAAATTGGAGCAGAAACTTTTGGAGTGGGTGAAACAATATCCTCCTGAAAGCAAAAGGTTTATCTTGATGATGGATCCAAGACTTGAGGGCCAGTATTCCATTAATGGAGCGCAAAAACTTGCCAAGCTTGCAGATAGTTGTCTGAGCAAGAGTGCAAAAGAAAGACCAACAATGAGTCAAGTGGTAGAGATATTGAAGCAGATAATCAAAATTTCTGATGATGAAAAATCTGCTGAGAGAAACATTCACATACCTGAAGATGATGATCCACTTGAGCCTGAAGAAAAGCCAAGTCAACCAGCCCCTTCAGAATTATGGAAAAAGAGGATGGCTCATCTTGCTAAACTTGGTGAGCATGTGGAAAGTGCTAGTAGAAAAAGATTTATGATGCTACAGAGAGCCAAAGTTCCTTAA 1287 0.4064 MSCFYYFKDKSKKWKQRSAPELKEQVKSQYSETERVTKSSCSSYSSRSITELYEKKAHNLRIFSFVELRRATDDFNKLYKIGEGGFGSVYKGSIKSVDGNGDPILVAIKRLNQNGLQGHKQWLAEVQFLGVVEHPNLVKLIGYCAVDGERGIQRLLVYEYMSNKSLESHLFNKAFDPLPWKRRLEVALGAAQGLAYLHEDSETQVIYRDFKCSNILLDENFRPKLSDFGLAREGPVAGHTHVSTAVMGTYGYAAPDYIETGHLTTKSDVWSFGVVLYEILTGRRAVERNRPKLEQKLLEWVKQYPPESKRFILMMDPRLEGQYSINGAQKLAKLADSCLSKSAKERPTMSQVVEILKQIIKISDDEKSAERNIHIPEDDDPLEPEEKPSQPAPSELWKKRMAHLAKLGEHVESASRKRFMMLQRAKVP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01333 428 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Rops8g01333 428 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 161 369 - -
Rops8g01333 428 PANTHER OS01G0588500 PROTEIN-RELATED 35 359 - -
Rops8g01333 428 Gene3D Transferase(Phosphotransferase) domain 1 161 379 - -
Rops8g01333 428 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Rops8g01333 428 Gene3D Phosphorylase Kinase; domain 1 45 160 - -
Rops8g01333 428 MobiDBLite consensus disorder prediction 375 396 - -
Rops8g01333 428 CDD STKc_IRAK 81 359 - -
Rops8g01333 428 Pfam Protein tyrosine and serine/threonine kinase 79 356 IPR001245 GO:0004672|GO:0006468
Rops8g01333 428 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01333 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01333 Rops-Chr8 29066940 29076343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01333 1 389 Glycoside Hydrolase AT3G07070 43.073 2.33e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops8g01333 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01333 - - gmx:100781858 654.44