Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01326 ATGGGAAAAGCTTCAATGGATGGCTTTATGCTACTATTGAGCGTGATGGTTTTGTTGGTTCTCGGTGCCTCGCAGTTTGAAGACGATGTGAGATGCCTCAGAGGCATCAAGAACTCTCTCAGTGACCCTCAAGGGAAGCTCGCATCATGGCGATTCGACAACACCACCGTCGGTTTCATCTGTGAGTTCGTGGGGGTAACGTGCTGGAACCCACAGGAAAATCGGGTCATCAATCTGGAGCTCCGAGATATGAAGCTCTCGGGTCAAGTCCCTGAGTCCCTCAAGGACTGTCGTAAGAGCCTGCAAAAGCTAGATCTTGGTTCCAACATGCTCTCTGGTTCGATCCCATCTAAGATCTGTCAGTGGATGCCGTATTTGGTAACACTGGACCTTTCAGACAATGATCTTTCTGGGCCTATACCCAAGACCCTATCGAATTGCACTTATTTGAATGAATTGGAGTTGTCTGATAATGAGCTTTCGGGTTCTATCCCTTATGAATTTGGGAGCTTGGGTAGGCTTAAGAAGTTTTCTGTGGCTAACAATCATCTCAGTGGTACCATCCCTGGGTTTTTTAGCATGTTTGGGAAGGAAAACTTTGATGGGAATAGTGGGTTATGTGGGCCCCCTCTTGGATCAAAGTGTGGTGGGTTGAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGGGTGTTTGGTGCAGCTGCTTCTTTGTTGTTGGCTTTTGGGTTGTGGTGGTGGTATCATATGGGGTTGAGTAGGAAGAAGAGAGCATATGGGGTTGGAACAGATGGTGATTGGGCTGTGAGATTGAGGGGTCATAAGCTTGTTCAGGTTTCCTTGTTTCAGAAACCCCTTGTTAAGGTTAAGCTAGGGGATTTGATGGCGGCTACAGATAATTTCAGTGCTGAGAATATTCTTGTTGATACAAGAACAGGGACTACTTATAAAGCTGATCTTCCTGATGGATCAACGCTTGTGGTGAAGCGGCTCAATAGTTGTAAGATTGGGGAGAAGCAATTTCGGATGGAGATGAATAGGCTAGGACAAGTTAGGCACCCGAATTTGGCACCCCTTTTGGGTTTCTGTGTTGTGGAAGAGGAAAAGTTTGTGGTATATAAGCACATGTCAAATGGGACTCTGCATAACTTGTTGCATAAGAATGGCAGCAGATTGGATTGGCAGGTGAGGTTCAGGATTGGATTGGGGGCAGCTAGGGGTCTTGCTTGGCTGCATCATGGGTGCAATCCTCCAATTATACAACAAAACATCTGTTCCAATGTGATTCTTATTGATGAAGATTTTGATGCTCGGTTAATGGACTTTGGACTTGCTAGGCTGATGACTTCTGATTCTGAAGGGAGTAGTTTTATTAATGGGGATTTGGGGGAACTTGGCTATATTGCTCCAGAATATTCAAGTACCCTGGTTGCTTCACAAAAGGGGGATGTGTATGCATTTGGGGTTGTGCTTTTAGAGTTGGCTACTGGTCTCAAACCTCTTGAAGTCAGCAGTGGAGAGGAAGAATATAAAGGGAGCTTAGTAGAATGGGTAAATAAGCTATCTAGTTCAGGTCGAATCAAGGATTGCATTGATAAAGAAATATGTGGAAGGGGACGTGATGATGAGATTCTGCAGTTCCTGAAAATTGCATTGAATTGTGTGGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAGGTATATCATTCATTAAAGAGTATGTCCAAAGACCACAGTTTCTCTGAACATGATGATGAATTTCCATTGATCTTTGATAGACCAGCAAATGAGCTTGCTTAG 1803 0.4448 MGKASMDGFMLLLSVMVLLVLGASQFEDDVRCLRGIKNSLSDPQGKLASWRFDNTTVGFICEFVGVTCWNPQENRVINLELRDMKLSGQVPESLKDCRKSLQKLDLGSNMLSGSIPSKICQWMPYLVTLDLSDNDLSGPIPKTLSNCTYLNELELSDNELSGSIPYEFGSLGRLKKFSVANNHLSGTIPGFFSMFGKENFDGNSGLCGPPLGSKCGGLSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHMGLSRKKRAYGVGTDGDWAVRLRGHKLVQVSLFQKPLVKVKLGDLMAATDNFSAENILVDTRTGTTYKADLPDGSTLVVKRLNSCKIGEKQFRMEMNRLGQVRHPNLAPLLGFCVVEEEKFVVYKHMSNGTLHNLLHKNGSRLDWQVRFRIGLGAARGLAWLHHGCNPPIIQQNICSNVILIDEDFDARLMDFGLARLMTSDSEGSSFINGDLGELGYIAPEYSSTLVASQKGDVYAFGVVLLELATGLKPLEVSSGEEEYKGSLVEWVNKLSSSGRIKDCIDKEICGRGRDDEILQFLKIALNCVVSRPKDRWSMYQVYHSLKSMSKDHSFSEHDDEFPLIFDRPANELA* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01326 600 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Rops8g01326 600 Gene3D Phosphorylase Kinase; domain 1 262 375 - -
Rops8g01326 600 Pfam Protein tyrosine and serine/threonine kinase 322 518 IPR001245 GO:0004672|GO:0006468
Rops8g01326 600 SUPERFAMILY L domain-like 25 198 - -
Rops8g01326 600 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Rops8g01326 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 26 216 - -
Rops8g01326 600 SUPERFAMILY Protein kinase-like (PK-like) 279 572 IPR011009 -
Rops8g01326 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Rops8g01326 600 ProSiteProfiles Protein kinase domain profile. 301 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01326 600 Gene3D Transferase(Phosphotransferase) domain 1 376 597 - -
Rops8g01326 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 376 594 - -
Rops8g01326 600 Gene3D Ribonuclease Inhibitor 27 217 IPR032675 -
Rops8g01326 600 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 69 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01326 Rops-Chr8 28982003 28984147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01326 10 598 Receptor kinase-like Gene Family AT3G28450 66.110 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Rops8g01326 PK_Tyr_Ser-Thr 1.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01326 - - gmx:100810378 887.871