Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01317 ATGTCGTCGGTGTCAAATCTTGTTCTCTTTCTCACACTCACATTACTGTTCAATCTTTCAGAATCAAGACTTACATTAGATTACTACGATAAATCGTGTCCGCAATTTAACCAAATCATTAGAGACACCATAACGAACAAGCAGATCGCCAACCCAACCACAGCCGGCGCCACCCTCCGCCTCTTCTTCCATGACTGCCTCCTCCCCAACGGCTGCGACGCCTCCATGCTCATCTCCTCGACACCCTTCAACAAGGCGGAGCGCGACGCCGACATCAACCTCTCCCTCCCCGGTGACGCATTCGACGCCGTCGTCCGCGCCAAGACTGCCCTCGAACTCACCTGTCCCAACACCGTCTCATGCGCCGACATCCTCGCCGTCGCCACCCGTGACCTCGTAACCATGGTCGGCGGCCCCTTCTACCCCGTCTTCCTCGGACGCCGCGACGGTCGAGATTCCAAGACCTCAACAGTCGCCAATAATCTCCCAAAACCCTCAATGTCAATGTCGCAGATCATCGAGATCTTCTCCAGGAGAGGGTTCTCCGTTGAAGAAATGGTGGCACTCAGTGGGGCCCACACCATTGGGTTCTCACATTGCAGTGAGTTCAACAGTGACATCTACAACTACAACGACTCTTCACAGTGCGATCCTCAGTATAACCCTCGATTCGCGCAAGGGTTGCAAAAGGCTTGTGCTGATTATGGGAAGAACCCAACGCTTTCGGTGTTCAATGATATAATGACTCCTAATAAGTTCGATAATGTGTACTTCCAGAACCTTCCGAAGGGGTTTGGGGTTTTGAAATCGGATCGTGGTTTGTATAGTGACCCCAGAACGAGGCCTTTTGTGGAAAAGTTTGCTGCGGATCAGAAGGTGTTCTTTCAGGCATTTGCTCGAGCAATGCAGAAGTTGAGTCTTTTGGGAGTGAAAACGGGAAGGAGAGGAGAGATCAGGCGCAGGTGTGACCAGATAAATTGA 981 0.5168 MSSVSNLVLFLTLTLLFNLSESRLTLDYYDKSCPQFNQIIRDTITNKQIANPTTAGATLRLFFHDCLLPNGCDASMLISSTPFNKAERDADINLSLPGDAFDAVVRAKTALELTCPNTVSCADILAVATRDLVTMVGGPFYPVFLGRRDGRDSKTSTVANNLPKPSMSMSQIIEIFSRRGFSVEEMVALSGAHTIGFSHCSEFNSDIYNYNDSSQCDPQYNPRFAQGLQKACADYGKNPTLSVFNDIMTPNKFDNVYFQNLPKGFGVLKSDRGLYSDPRTRPFVEKFAADQKVFFQAFARAMQKLSLLGVKTGRRGEIRRRCDQIN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01317 326 Gene3D - 27 326 - -
Rops8g01317 326 ProSiteProfiles Plant heme peroxidase family profile. 23 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PANTHER - 8 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 Gene3D Peroxidase, domain 2 163 305 - -
Rops8g01317 326 SUPERFAMILY Heme-dependent peroxidases 24 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 Pfam Peroxidase 41 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Rops8g01317 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Rops8g01317 326 FunFam Peroxidase 163 305 - -
Rops8g01317 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g01317 326 FunFam Peroxidase 27 178 - -
Rops8g01317 326 CDD secretory_peroxidase 24 325 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01317 Rops-Chr8 28822302 28823694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01317 20 326 Peroxidase AT5G40150 69.381 1.75e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01317 K00430 - cit:102630558 490.345