Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01298 ATGTATAGAATAATATCCACGCCGGCTTCAAAGTTCCGCCAATTCCGGCGAATCCGCTCGGAACCGACAACCGACGAGGAACACGCTTTCCACATCCTATGGCGGTACCAGATCCTAGACCCAGACAGCGACATCGTAGCGATATGGAACAGGGTGTTTCTTGTGGCCAGTCTCCTCGCCCTCTTCGTGGACCCTCTTTACTTCTTCCTCCCCACCGTTGGAGGCCCCGCTTGCTTGCAAGCAGACCGCAAAATGAGCATCGTTGTCACCATCATTCGCTCCTTCGCAGACCTCTTTTACGTCTTCCACATGGTCATGAAGTTCCGCACCGCCTTTGTCGCCCCCAATTCTAGAGTCTTCGGCCGCGGTGAGCTCGTCATGGATGCACGTGAAATCGCCATGCGTTACTTGAAGTCCGATTTTGTCATTGACCTTGCTGCCACCATTCCACTACCCCAGATTGTGATTTGGTTAGTGATTCCAGCGAGTGAAAACGCAAGCACAGATCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTATGTTCCTAGACTGTTTCTTATCTTTCCTTTGAACCAACGTATTCAGAAAACCACTGGTGTTATCGCCAAGACTCCTTGGATTGCAGCCGCATACAATCTTCTTCTCTACATGCTAGCTAGTCATGTTACAGGAGCAACTTGGTATCTATCGTCAATAGGGAGACAATTTAACTGCTGGAAAACACAGTGTCAACTGGAAAATAAATCACATACCCTGTCTTGCTTGCCTAGTTATCTTGATTGTAATAGTTTGGATCTCCCTGAGAGGCAATACTGGTTAAATATCACCCGCGTTATTAGCAAGTGCGATGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGGATGTTTGCAGATGCTTTTTTGAATGACGTTGTCATTTCCAATTTTAAAGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCTTATGGACAGAATTTGGACACCACCACATACCTTCCAGAGACATTTTTTTGCATCATTTTATGCATTGCTGGATTAGTTCTCTTTTCACTTTTGATTGGAAACATGCAGATGTACTTGCAATCGATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACTGAAGAGTGGATGAGGCATCGCCAGTTACCTCAAGATTTGCAGGAACGTGTCCGTCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAGGCCATACTACTTTCGTTACCTTTGGATCTTCGTCGTGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCTTTCTTTTCACAAATGGATGATCAGCTCCTTGATGCCATCTGTGAACGCCTTGTGTCATCATTGAGCACAGAAGGCACATACATATTTCGAGAAGGTGATCCAGTTGATGAAATGCTATTTATCATTAGAGGGCAATTGGAGAGTTCTACAACAAATGGAGGAAGGTTTGGATTCTTCAATTCCATCACACTCAGGCCTGGTGACTTTTGTGGAGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTTCCTTCTTCTACTCGAACCGTCAAAGCTCTTACTGAAGTTGAAGCTTTTGCACTCGAAGCAGAGGATCTGAAATTTGTAGCAGGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTCATACAAGCTGCCTGGAGAAGGTATCAGAAAAGGAAGGCAACAAGGGAATTATCCCTGAAAGAGAGACTCTACTACATTACAGAGCCTGAGACAGAGGATAGTTATTACATCGTAGGGGATGAAAGTGGAGATTATGAGGATGAGATCGAGGGATCCTCAGGGAATGTGCCAAACATTAAAAATCTTGGTGCAACTATTTTAGCCTCAAGGTTTGCTGCCAATACAAGGAAAGGGAACAATAAGATTCAAGGCAGTGATCCTGTGCCGCAGTTGTTCAAACCAGATGAACCTGATTTCTTCATAGACCATGAGGATGTTTAG 2091 0.4424 MYRIISTPASKFRQFRRIRSEPTTDEEHAFHILWRYQILDPDSDIVAIWNRVFLVASLLALFVDPLYFFLPTVGGPACLQADRKMSIVVTIIRSFADLFYVFHMVMKFRTAFVAPNSRVFGRGELVMDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASENASTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIAAAYNLLLYMLASHVTGATWYLSSIGRQFNCWKTQCQLENKSHTLSCLPSYLDCNSLDLPERQYWLNITRVISKCDAKSKINIKYKFGMFADAFLNDVVISNFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETFFCIILCIAGLVLFSLLIGNMQMYLQSMSVRLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRFGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALTEVEAFALEAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYQKRKATRELSLKERLYYITEPETEDSYYIVGDESGDYEDEIEGSSGNVPNIKNLGATILASRFAANTRKGNNKIQGSDPVPQLFKPDEPDFFIDHEDV* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01298 696 CDD CAP_ED 448 579 IPR000595 -
Rops8g01298 696 SMART cnmp_10 448 579 IPR000595 -
Rops8g01298 696 Pfam Cyclic nucleotide-binding domain 471 558 IPR000595 -
Rops8g01298 696 MobiDBLite consensus disorder prediction 667 687 - -
Rops8g01298 696 FunFam Cyclic nucleotide-gated ion channel 1 375 439 - -
Rops8g01298 696 Pfam Ion transport protein 48 375 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops8g01298 696 ProSiteProfiles cAMP/cGMP binding motif profile. 448 578 IPR000595 -
Rops8g01298 696 Gene3D Jelly Rolls 446 566 IPR014710 -
Rops8g01298 696 SUPERFAMILY Voltage-gated potassium channels 40 370 - -
Rops8g01298 696 Gene3D - 53 371 - -
Rops8g01298 696 Gene3D Helix hairpin bin 372 439 - -
Rops8g01298 696 SUPERFAMILY cAMP-binding domain-like 378 573 IPR018490 -
Rops8g01298 696 FunFam Cyclic nucleotide-gated ion channel 1 446 564 - -
Rops8g01298 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01298 Rops-Chr8 28558899 28563558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01298 30 696 Ion Channels AT5G14870 70.088 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01298 K05391 - gmx:100802812 1238.02