Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01294 ATGGCTTGGATTCAACATCAAATCCAACAAAAGGATGGTTACATGAGCTACACACCAGTTTTGCCTTCACCTTCAACCCCATATTCGGGTTCTTTACACAGAGAATCAATGTCTACTTCAACACCCTCACCTTCATCATCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTCATTATAGTGATCCTGGCTGTTCTGTTTTTCATTTCGGGTTTGCTCCATTTGCTTGTTAGATTTCTGATAAAGAACCCATCTTCCTCAGCATCTGCTCAATCTAATAGACACCAGGAAATTTCTACCTCTGATGCTCTTCAGAGACAGCTGCAACAGCTTTTCCATCTTCATGATTCTGGTCTGGACCAAGCTTTTATTGATGCACTTCCTGTTTTCCAGTATAAGGAGATAAAGGGACTGAAGGAGCCATTTGATTGTCCTGTTTGTCTATGTGAATTTTCTGAGAAGGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCTTTTCATATCAATTGTATAGACACCTGGCTTCTATCAAATTCCACATGTCCACTTTGTAGGGGAACCCTCCTAACTCCAGGCTTTTCCATTGAGAATCCAATGTATGATTTTGATGATTTGAGGGATGATGAGATCTGCCCCTGTAATGCAGAGAATGAATTCGCTACTAGACAAAAAACAGTTGAAATTGAAGAAACTGTAGAGAAGGGGTTTTTCCCTGTAAGACTTGGTAAATTCAGAAGGCTGGATGTGGAGGCAGTGGAAACTGTAGGAGTAGAGACTAGTAGCAGTAATTTGGATGCGAGAAGATGTTACTCGATGGGATCTTACCAATATGTTCTTGGCAATTCAGACCTCCGTATAACCTTGAACCATGACAAACAAGGTCATGATGCAAAGCTCACAAAAGGAACAGAAAACTTGGAGAAGCTTTCAGTTGAGGAGGATATTGAAGCAAAGAATATTAGAAGTGTCAGTAAAGGTGAGAGCTATTCTGTTTCCAAAATCTGGTTGTGGTCAAAGAAGGGAAAGTTTTCAGTTTCTTCCGATGCCCAGATGGGTATGCCATCTTCTCTTAACACAGACTTGTCTTGGATGAGGGAAACAGAAGGGACATGA 1113 0.4133 MAWIQHQIQQKDGYMSYTPVLPSPSTPYSGSLHRESMSTSTPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASAQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGLKEPFDCPVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTPGFSIENPMYDFDDLRDDEICPCNAENEFATRQKTVEIEETVEKGFFPVRLGKFRRLDVEAVETVGVETSSSNLDARRCYSMGSYQYVLGNSDLRITLNHDKQGHDAKLTKGTENLEKLSVEEDIEAKNIRSVSKGESYSVSKIWLWSKKGKFSVSSDAQMGMPSSLNTDLSWMRETEGT* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01294 370 CDD RING-H2_EL5-like 142 185 - -
Rops8g01294 370 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Rops8g01294 370 FunFam RING-H2 finger protein ATL46 105 190 - -
Rops8g01294 370 SUPERFAMILY RING/U-box 122 191 - -
Rops8g01294 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 46 335 - -
Rops8g01294 370 MobiDBLite consensus disorder prediction 25 48 - -
Rops8g01294 370 SMART ring_2 143 184 IPR001841 -
Rops8g01294 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 190 IPR013083 -
Rops8g01294 370 Pfam Ring finger domain 142 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01294 Rops-Chr8 28423876 28426447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01294 40 342 C3H Transcription Factor Family AT2G18650 39.942 5.02e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01294 - - cave:132183306 531.946