Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g01293 | ATGACTAATTGTGTGGAGGATGAGGTCAAGAGAACACTGATACAGTTCATGGCACAACTCTCTGGAAATAATGGCCAACAGAATTCAACTTTGGATTGGAAGCCAGACACTGATCCCTGCAAGGACCAGTGGCAAGGTGTATACTGTGATGCTCGAAATATGTCTATAAAGAGGTTATATCTTGATAGGTTCAATTTGGCTGGAACTCTTGATGTTGCTATGCTTTGCAACTTGCAGCCCCTGGCTGCATCTCTCACCTTTCTTAGCCTTGATGGTAACAACATTGGTGGAGAGATAGTAACTGAGATTGGTAACTGCAAACAACTCACTCGCCTGCATGTAAGTGGAAACCAACTTGCTGGAAATCTTCCTAGTTCACTTGCCATGTTAAACAATTTGAAAAGGCTAGACATTTCGAACAACAAGTTTTCGGGTCCGTTGCCAGACTTGTCCAGTATCTCTGGGCTGAACATGTTCCTTGCACAAAATAATCATCTAACTGGAGATATACCAGCATTTGATTTCTCCAATTTTGACCAATTCAATGTTTCCTTTAACAACTTCAGTGGCCTCATTCCAGATGTGCATGGTCATTTCTTTGCAGACAGTTTCCTAGGCAATCCAGAATTATGTGGAGATCCACTACCCAAAAAATGTTCTGATCTGCCTATTCAAGCTAGTGAGACATCAGAAGAGTCAAGGAGATCAAATGGTCCTTCTAAAGAGCAGATTCTTATATATTCAGGCTATGCTGCACTGGGTGTTGTCATAATCCTTTTTGTAGTCTTAAAGCTGTGTAGAAGAAAGAAAAGAGAAAATAAAATTGAAGCATTAAATGGGGTAGTGGCAACTGATGGTGGCATTGAGAAGCCCAGCAATGCTACAAATGAATACAAAGCAGAGGTAAGCAGATCTGAGTTTTCAGTCACTTCTGAGAGTGGAATGGTTTCACAATCGCTTATTGTTCTTTCAAGGCCAGAAGTAAATGAACTGAAATTGGAGGACCTGCTGAGGGCCCCAGCAGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTATAAGGTGATTCTTATCAATGGAATAACTGTGGTTGTTAAAAGGATCAAGGATTGGACTATTTCCAGCCATGACTTCAAGCAAAGAATGCAAATGCTTAGTCAAGTAAAGCACCCTCATGTACTGTCACCTCTTGCTTTCTATTGTTCCAATCAAGAGAAGCTTTTGGTCTACGAATATAGGGAGAATGGAAGTTTATTCAAGCTTATACATGGTTCTTCAAACACGTTTGACTGGACCAGCAGACTCGGAATTGCAGCTACAATTGCTGAGGCATTAGCTTTCATGCATCAAGAGCTTGGCCAGCATGGTATTGTTCATGGTAATCTGAAATCCTCAAATATATTGCTAAACAAGAACATGGAGCCATGTATAAGTGAGTATGGTGTTGTGGGCATGGATGATCAACAAAATTCACCTTTGGCCAGTCCTATTGCTGCTGGTTCATCAGAGGTCTTCAAGGGAGATGTTTATGGATTTGGTGTTATTCTTCTTGAAATGCTTACTGGAAAGTTAGTGAAGAGTAATGGGATTGACTTGACAGATTGGGTTCAGTCAGTTGTAAGGGAAGAATGGACAGGTGAAGTCTTTGATAGGTCACTATTATCAGAATATGCAAGTGAAGAGAGGATGGTCAATTTGCTTCAGGTGGCTATAAGATGTGTCAATCGTTCCCCAGAGGCTAGGCCGAATATGAATCAAGTTGCTCTCATGATTAACACTATAAAAGATGAAGAAGAAAAATCCTTGATTTACGAAGTGTGA | 1821 | 0.4069 | MTNCVEDEVKRTLIQFMAQLSGNNGQQNSTLDWKPDTDPCKDQWQGVYCDARNMSIKRLYLDRFNLAGTLDVAMLCNLQPLAASLTFLSLDGNNIGGEIVTEIGNCKQLTRLHVSGNQLAGNLPSSLAMLNNLKRLDISNNKFSGPLPDLSSISGLNMFLAQNNHLTGDIPAFDFSNFDQFNVSFNNFSGLIPDVHGHFFADSFLGNPELCGDPLPKKCSDLPIQASETSEESRRSNGPSKEQILIYSGYAALGVVIILFVVLKLCRRKKRENKIEALNGVVATDGGIEKPSNATNEYKAEVSRSEFSVTSESGMVSQSLIVLSRPEVNELKLEDLLRAPAELIGRGKNGSLYKVILINGITVVVKRIKDWTISSHDFKQRMQMLSQVKHPHVLSPLAFYCSNQEKLLVYEYRENGSLFKLIHGSSNTFDWTSRLGIAATIAEALAFMHQELGQHGIVHGNLKSSNILLNKNMEPCISEYGVVGMDDQQNSPLASPIAAGSSEVFKGDVYGFGVILLEMLTGKLVKSNGIDLTDWVQSVVREEWTGEVFDRSLLSEYASEERMVNLLQVAIRCVNRSPEARPNMNQVALMINTIKDEEEKSLIYEV* | 607 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g01293 | 606 | Gene3D | Phosphorylase Kinase; domain 1 | 305 | 412 | - | - | |
Rops8g01293 | 606 | Pfam | Leucine rich repeat N-terminal domain | 11 | 50 | IPR013210 | - | |
Rops8g01293 | 606 | Gene3D | Ribonuclease Inhibitor | 9 | 177 | IPR032675 | - | |
Rops8g01293 | 606 | ProSitePatterns | Protein kinases ATP-binding region signature. | 344 | 366 | IPR017441 | GO:0005524 | |
Rops8g01293 | 606 | ProSiteProfiles | Protein kinase domain profile. | 338 | 594 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops8g01293 | 606 | FunFam | Nuclear pore complex protein NUP107 | 6 | 172 | - | - | |
Rops8g01293 | 606 | Gene3D | Ribonuclease Inhibitor | 178 | 222 | IPR032675 | - | |
Rops8g01293 | 606 | SUPERFAMILY | Protein kinase-like (PK-like) | 342 | 590 | IPR011009 | - | |
Rops8g01293 | 606 | Gene3D | Transferase(Phosphotransferase) domain 1 | 414 | 605 | - | - | |
Rops8g01293 | 606 | PANTHER | OS05G0588300 PROTEIN | 10 | 596 | - | - | |
Rops8g01293 | 606 | Pfam | Protein tyrosine and serine/threonine kinase | 342 | 588 | IPR001245 | GO:0004672|GO:0006468 | |
Rops8g01293 | 606 | SUPERFAMILY | L domain-like | 36 | 198 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g01293 | Rops-Chr8 | 28415730 | 28417907 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g01293 | 12 | 595 | Receptor kinase-like Gene Family | AT1G68400 | 35.144 | 3.47e-93 | 299 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Rops8g01293 | PK_Tyr_Ser-Thr | 7.5e-24 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g01293 | - | - | gmx:100813796 | 960.674 |