Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01293 ATGACTAATTGTGTGGAGGATGAGGTCAAGAGAACACTGATACAGTTCATGGCACAACTCTCTGGAAATAATGGCCAACAGAATTCAACTTTGGATTGGAAGCCAGACACTGATCCCTGCAAGGACCAGTGGCAAGGTGTATACTGTGATGCTCGAAATATGTCTATAAAGAGGTTATATCTTGATAGGTTCAATTTGGCTGGAACTCTTGATGTTGCTATGCTTTGCAACTTGCAGCCCCTGGCTGCATCTCTCACCTTTCTTAGCCTTGATGGTAACAACATTGGTGGAGAGATAGTAACTGAGATTGGTAACTGCAAACAACTCACTCGCCTGCATGTAAGTGGAAACCAACTTGCTGGAAATCTTCCTAGTTCACTTGCCATGTTAAACAATTTGAAAAGGCTAGACATTTCGAACAACAAGTTTTCGGGTCCGTTGCCAGACTTGTCCAGTATCTCTGGGCTGAACATGTTCCTTGCACAAAATAATCATCTAACTGGAGATATACCAGCATTTGATTTCTCCAATTTTGACCAATTCAATGTTTCCTTTAACAACTTCAGTGGCCTCATTCCAGATGTGCATGGTCATTTCTTTGCAGACAGTTTCCTAGGCAATCCAGAATTATGTGGAGATCCACTACCCAAAAAATGTTCTGATCTGCCTATTCAAGCTAGTGAGACATCAGAAGAGTCAAGGAGATCAAATGGTCCTTCTAAAGAGCAGATTCTTATATATTCAGGCTATGCTGCACTGGGTGTTGTCATAATCCTTTTTGTAGTCTTAAAGCTGTGTAGAAGAAAGAAAAGAGAAAATAAAATTGAAGCATTAAATGGGGTAGTGGCAACTGATGGTGGCATTGAGAAGCCCAGCAATGCTACAAATGAATACAAAGCAGAGGTAAGCAGATCTGAGTTTTCAGTCACTTCTGAGAGTGGAATGGTTTCACAATCGCTTATTGTTCTTTCAAGGCCAGAAGTAAATGAACTGAAATTGGAGGACCTGCTGAGGGCCCCAGCAGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTATAAGGTGATTCTTATCAATGGAATAACTGTGGTTGTTAAAAGGATCAAGGATTGGACTATTTCCAGCCATGACTTCAAGCAAAGAATGCAAATGCTTAGTCAAGTAAAGCACCCTCATGTACTGTCACCTCTTGCTTTCTATTGTTCCAATCAAGAGAAGCTTTTGGTCTACGAATATAGGGAGAATGGAAGTTTATTCAAGCTTATACATGGTTCTTCAAACACGTTTGACTGGACCAGCAGACTCGGAATTGCAGCTACAATTGCTGAGGCATTAGCTTTCATGCATCAAGAGCTTGGCCAGCATGGTATTGTTCATGGTAATCTGAAATCCTCAAATATATTGCTAAACAAGAACATGGAGCCATGTATAAGTGAGTATGGTGTTGTGGGCATGGATGATCAACAAAATTCACCTTTGGCCAGTCCTATTGCTGCTGGTTCATCAGAGGTCTTCAAGGGAGATGTTTATGGATTTGGTGTTATTCTTCTTGAAATGCTTACTGGAAAGTTAGTGAAGAGTAATGGGATTGACTTGACAGATTGGGTTCAGTCAGTTGTAAGGGAAGAATGGACAGGTGAAGTCTTTGATAGGTCACTATTATCAGAATATGCAAGTGAAGAGAGGATGGTCAATTTGCTTCAGGTGGCTATAAGATGTGTCAATCGTTCCCCAGAGGCTAGGCCGAATATGAATCAAGTTGCTCTCATGATTAACACTATAAAAGATGAAGAAGAAAAATCCTTGATTTACGAAGTGTGA 1821 0.4069 MTNCVEDEVKRTLIQFMAQLSGNNGQQNSTLDWKPDTDPCKDQWQGVYCDARNMSIKRLYLDRFNLAGTLDVAMLCNLQPLAASLTFLSLDGNNIGGEIVTEIGNCKQLTRLHVSGNQLAGNLPSSLAMLNNLKRLDISNNKFSGPLPDLSSISGLNMFLAQNNHLTGDIPAFDFSNFDQFNVSFNNFSGLIPDVHGHFFADSFLGNPELCGDPLPKKCSDLPIQASETSEESRRSNGPSKEQILIYSGYAALGVVIILFVVLKLCRRKKRENKIEALNGVVATDGGIEKPSNATNEYKAEVSRSEFSVTSESGMVSQSLIVLSRPEVNELKLEDLLRAPAELIGRGKNGSLYKVILINGITVVVKRIKDWTISSHDFKQRMQMLSQVKHPHVLSPLAFYCSNQEKLLVYEYRENGSLFKLIHGSSNTFDWTSRLGIAATIAEALAFMHQELGQHGIVHGNLKSSNILLNKNMEPCISEYGVVGMDDQQNSPLASPIAAGSSEVFKGDVYGFGVILLEMLTGKLVKSNGIDLTDWVQSVVREEWTGEVFDRSLLSEYASEERMVNLLQVAIRCVNRSPEARPNMNQVALMINTIKDEEEKSLIYEV* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01293 606 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Rops8g01293 606 Pfam Leucine rich repeat N-terminal domain 11 50 IPR013210 -
Rops8g01293 606 Gene3D Ribonuclease Inhibitor 9 177 IPR032675 -
Rops8g01293 606 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Rops8g01293 606 ProSiteProfiles Protein kinase domain profile. 338 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01293 606 FunFam Nuclear pore complex protein NUP107 6 172 - -
Rops8g01293 606 Gene3D Ribonuclease Inhibitor 178 222 IPR032675 -
Rops8g01293 606 SUPERFAMILY Protein kinase-like (PK-like) 342 590 IPR011009 -
Rops8g01293 606 Gene3D Transferase(Phosphotransferase) domain 1 414 605 - -
Rops8g01293 606 PANTHER OS05G0588300 PROTEIN 10 596 - -
Rops8g01293 606 Pfam Protein tyrosine and serine/threonine kinase 342 588 IPR001245 GO:0004672|GO:0006468
Rops8g01293 606 SUPERFAMILY L domain-like 36 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01293 Rops-Chr8 28415730 28417907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01293 12 595 Receptor kinase-like Gene Family AT1G68400 35.144 3.47e-93 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops8g01293 PK_Tyr_Ser-Thr 7.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01293 - - gmx:100813796 960.674