Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01291 ATGGGAGTTCACGGTCTCTGGGAACTTCTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAGACCCTCGCCGGAAAAACGCTCGCCGTCGACGCGAGCATATGGATGGTGCAGTTTGTGAAGGCGATGCGTGACGAGAAGGGCGAAATGGTTCGCAACGCTCATTTACTGGGCTTCTTCCGTCGCATTTGCAAGCTTCTTTTCCTCCGGACGAAGCCGGTCTTCGTCTTCGACGGTGGAACCCCTGCCCTGAAGCGCCGCACCGTGATCGCACGCCGTAGGCAGCGGGAAAACGCCCAAGCCAAAGTCCGCAAGACTGCCGAGAAATTGCTACTTAATCACTTGAAAGCGTTGAGATTGAAGGAACTGGCTGATGATGTTAAGAACCAGAGGCTGAAGCAGAAGAGCGATACTAAGGGTCAGAAAAAATCTAATGAGATGAACGTCGGTGATAGTGATTTAGGAAAAGTTCAAGTGAAAGAGCTAGATGAAATGTCTGCAGCTGAGGAGGGCAGAAATTTATCGCAAGAAATAATATCGACAAATTGCAACCAGGACAAGCTTGATGAAATGCTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATACTAGCTAGAAAAGGAGTGGTGTCTACTGTAATTAATCCCTCAGAGGAGGAAAGTGATGCAGATGAAGAGACGATACTGCCATCAGTCAATGCGGAAGTTGATATGGCTGTATTAGCTGCTTTGCCTCAGTCAATGCAACTGGATATTCTGGCACAGCTTAAAGGAAAGAAAACAGGATTGGTGAAGGAAGTTGACAACCAGAAACAACATGAGGTCAATGATCAGGGCAAGGGAAAGGGGATTTTGTTCAATGAAACTGACATGGCGGGATGTAGCTCAAGATGTGACAATATGACATCAAGGAGTGACAATCAAGACAAAATTGATGAAATGTTGGCTGCATCTATTGCTATGGAGGAAAATGAAGAGTCAGTAAACAATGTATCAACTTCTCTTGGGGTTTCCAACATTGAGGAAGAGGATGGTGATTATGATGAAAATGAAGAAATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTTTGCCTCCATCAATGCAACTTGATCTCCTTGTTCAGATGAGAGAGCGATTGATCGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAGATACAAGCTTACCTTAAAACTGTTGCTTTCCGACGTGAGATAGATGAAGTGCAGAAAGCTGCTGTTGGAGGAGGAGTAGGTGGTGTACAGACTTCACGGATCGCGTCTGAAGCCAACCGAGAATATATATTCTCATCATCTTTTACTGGTGACAAACAAGAACTTACCTCCACCAGATTAGAGAAGAATAAAGATACACAACAAAAGGCACAGGGATCACATTCTTCACAGAATTTTGCAAAGAGCATTGCAGCAGGCAACAATTATAATACTTCAGGTGGATTGGTTTGCAATGAACCCGATGAACCTGTTGATGAAAGTATTCAGACATATCTAGATGAGAGGGGTCGGTTTCGAGTAAGTAGATTGAGAGCTATGGGTATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATAGAGCAGGAAAGAACATATGCAAACAAGGCTGCAAGTGTTGAAACTGTACTAAATGCAGTGAATAATGGTCCATCAGAAAGTTCTGGGAACCGTTTTACTGGGAAATCACAAGCGGTGAATGTTGACTTAGTTGGAGAGATTGCGCAAAATGAGCAATCAAAGCTTGACGGGGATACTTCTATAGAGATCTCCTTTGAAAATGAGTGCAATAATAAGTTTGTAAGTGATGAGGATGATATATTTGCCAGTCTGGTTGGAGGAAATCCAGTGTCACTCTTCAATGCTGATGATACCACAGCCAAAGTGCAGCCTTCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTTGAAGGTAAGAACAGCATTTTCTCTGAACATAATAAGGTGGAATTGAAGTCTTCTGTTGTAGACAAGGATAATAATAGTGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGCTGCTAAAAGCTCCTTAGGGTGTCCAGTTGAGTCAGGAAAATTGGCATCTCGAGGGTGCTTGGAGGAGGAGTCTGATTTGCCAGGAAAATTGACATCTCGAGGGTACTTGGAGGAGGAAGCTGATTTGCAGGAGGCAATAAGGAGAAGTCTTGAGAGTACAGGGGATGGGAAACTTGAAAGCATTTCAACTGTTGATGAGCATTCAAATGCTTATGAGAACAAATTGGATTCTGAATTAGAACATGGAGATAATCTGCATTGTTCTGGCCCAACAGATTTAAATGATAATAGTATGGGTGGTTCTACTTTGCCTAGGAAAGGTGGTACTGAACAAAATGAATTGCCTGAAACTGTAGATGGAGATAAAAACCATGATTATGTTACTACAAATAACCCACAAACTCTCTGTGGAAGTCAGTCAAAGTCATCCTTGACATTTAATTCCAATCACATGAAGATATTGATTGATAAACCTTGCAGACATGATAGACACTCTTGTTCAGAAGATTCAATTTCAGATGCAAATGTCATGATGAAGGATGAGGTCCCCATGGTTGTAGAACAATTATTGGATAAACGTAATGATGATGGTGAAGTGTCTTCCCATTGTAACAATTTGTCTAAGGTTGATTCACTTGGTACGACTGAAGAGGAGAAAAAGAACTATATTAATGAATCTGAACCATTGAGTTATTCTACTGACAATACAACGCCTGCTATTCTTGTGATGGAGTCATCTCTGAAAGGATCTACTGAAGACCTTGATATTGAGCAAAAATTGCCTTCAGTGGACAATGATGGAAATTTATCTGAGGAAAGGAATAGTAACCTTGCCAACGATGCAATGAACACCTCAGGAGATTTTCCTGCTCAGTCACCTGAGGTTAGATTGGAGGAAGAAATGCAAATTCTTGGTCGAGAATATATCAATCTGGAAAAAGAGCAGCGGAAACTTGAGCGTAATGCAGAATCTGTTAACAGTGAATTATTCACAGAATGTCAGGAACTGCTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCTGAAGCGCAGTGTGCTTACTTGGAACTCGCGAAACTGGTTGATGGTGTTGTGACCGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAACTTGGATTGACCAGAAAAAAAATAATTCGCATGGCACTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTTTAAATGCATTTCCGGAGGAAGATGGCCTCCTGAAATTTCGGCAGTGGGTTGACTCACCAGATCCCAGCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCCAATGCCAGGAAGAAAGGGTCAAAAGTTGAAGAGAAGATAAATATCTCAAATTGCAAGATTAAAGAGTCTGCATCAGATCAGGACATCTCCCATGCTAAGGAGCAAAAGGATTCACCTGATTACACCCAAGAAATAAAGCAAACTTTCATGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATGCCTCCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTATTCTCCACATGTTGACAAGTCAACTGAGCCTTTTGCGTGGGGAAAGCCAGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTGAAGGAATATAACAAACGGGAGACTCAACTGCGGTTGGAAGCATTTTACAGTTTCAATGATAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCAGTAAAAGGAATTACTGGTAAGCAGCCTACAGATTTAATAGATGATTCTTCAGAAAACTTGTCCAAGAATATAAAAAATGGGAAAAGAAGTCCTGTTGAACCTGGGGATGACAAATTGGAGACTTCAAAGGGAACAGAGGAAAGTCTTGCAGGTAGGAAGAAATCAAAATTGAAAGAGTCAATGAAAAGGAGGAATGATGGGGATACTGTTGCTAAGGCACAGTCAAAGAAAAAGAAAATCCATGACGATCCTTCTTCAGCTTGTGGTACATCTGTGGTGGAGAATTTACAGCCATGTATGCAAACTGAAGAAGAGCAATGTGATGGTAAGGCATTGGTCAGGGGTGGAAGTGGCAGAGGCAGAGGAAGAGGTAGAGGTGTAGGAGCAAAAAGAGGAAGAGAGAAGAAAAGTCTCCGTTTTCGATCATGTGAAACTGAAACATCCTCTAGTAGTAGTGACATTGATGATCATGAGCCAAGAGTGGAAGTTGATGTGTCAAAAGATCCAGATGTGGTGCGAAGGTCAATGCGATCTCGGAAACCTGTCAACTATTCTTTCAAGGACCTTGAAGTTGAAGATGCTGTTGATTCATTTGATCAGAGCAATCAGACATGCTTGCATGAAGAACCAGTAGAAGAAAAGTTATCTCACATTCATAGTGTATGTGGAGATGGTGCAACCAATTTCGGCAGAGGGAAAGAAAGCAGTATCATAAATCTTCCTCTAAAGGAAAACATGCCAAGAGACCATCCCGGGTCAGAAGGGTTGTTTTGCACGGATGCTGGTGAAACTAGTCATCCAAAGGCTGGAAATCGTGATAATTCTTTTGATTCTGACCCTTCTGATGACTACCACAAAATGGGAGGTGGGTTCTGTTTAGAAGATAACGAGATAGGTGACAACCATAATGCAACTGATGACATGAACGCTGCCACAGTGGATGATACTGCAGACTTTCACCACTGTTCTGATCCTTTGGATGAAACTGACCGTGATAAAAATAGTTCAGATATATTGTTTTCCGGCGCTGAAAAGGCTGAAAATGAGATACAAGATGGAGGGACGTCTCGTAAATTCAATGAAGAGCCAAGCGAAGACCTTCTAAATGCTAGTAGTTATGATCATCATTCTGACAAAGGGGTCTTGATACCAGAGAAAGCTGCTCATCACAATAGTGGGACCTCCACGGGAGCTTTCAGTGCTTTGCCGTTTTTGAAGAAAAGAAGGAAGAACTGA 5235 0.4208 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFVKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELADDVKNQRLKQKSDTKGQKKSNEMNVGDSDLGKVQVKELDEMSAAEEGRNLSQEIISTNCNQDKLDEMLAASIAAEENGILARKGVVSTVINPSEEESDADEETILPSVNAEVDMAVLAALPQSMQLDILAQLKGKKTGLVKEVDNQKQHEVNDQGKGKGILFNETDMAGCSSRCDNMTSRSDNQDKIDEMLAASIAMEENEESVNNVSTSLGVSNIEEEDGDYDENEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAVGGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLEKNKDTQQKAQGSHSSQNFAKSIAAGNNYNTSGGLVCNEPDEPVDESIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERTYANKAASVETVLNAVNNGPSESSGNRFTGKSQAVNVDLVGEIAQNEQSKLDGDTSIEISFENECNNKFVSDEDDIFASLVGGNPVSLFNADDTTAKVQPSGSDSDCDWEEGIVEGKNSIFSEHNKVELKSSVVDKDNNSESEVEWEEGDCDAAKSSLGCPVESGKLASRGCLEEESDLPGKLTSRGYLEEEADLQEAIRRSLESTGDGKLESISTVDEHSNAYENKLDSELEHGDNLHCSGPTDLNDNSMGGSTLPRKGGTEQNELPETVDGDKNHDYVTTNNPQTLCGSQSKSSLTFNSNHMKILIDKPCRHDRHSCSEDSISDANVMMKDEVPMVVEQLLDKRNDDGEVSSHCNNLSKVDSLGTTEEEKKNYINESEPLSYSTDNTTPAILVMESSLKGSTEDLDIEQKLPSVDNDGNLSEERNSNLANDAMNTSGDFPAQSPEVRLEEEMQILGREYINLEKEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTRKKIIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRQWVDSPDPSILGRLDAKSGSNARKKGSKVEEKINISNCKIKESASDQDISHAKEQKDSPDYTQEIKQTFMDKHRNVSKNWHMPPSFPSETVISAYYSPHVDKSTEPFAWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKRETQLRLEAFYSFNDRFAKIRSKRIKKAVKGITGKQPTDLIDDSSENLSKNIKNGKRSPVEPGDDKLETSKGTEESLAGRKKSKLKESMKRRNDGDTVAKAQSKKKKIHDDPSSACGTSVVENLQPCMQTEEEQCDGKALVRGGSGRGRGRGRGVGAKRGREKKSLRFRSCETETSSSSSDIDDHEPRVEVDVSKDPDVVRRSMRSRKPVNYSFKDLEVEDAVDSFDQSNQTCLHEEPVEEKLSHIHSVCGDGATNFGRGKESSIINLPLKENMPRDHPGSEGLFCTDAGETSHPKAGNRDNSFDSDPSDDYHKMGGGFCLEDNEIGDNHNATDDMNAATVDDTADFHHCSDPLDETDRDKNSSDILFSGAEKAENEIQDGGTSRKFNEEPSEDLLNASSYDHHSDKGVLIPEKAAHHNSGTSTGAFSALPFLKKRRKN* 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01291 1744 Gene3D - 223 261 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 128 153 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 788 833 - -
Rops8g01291 1744 Gene3D - 978 1114 - -
Rops8g01291 1744 FunFam DNA repair protein UVH3 1115 1172 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 971 998 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 797 816 - -
Rops8g01291 1744 Pfam XPG I-region 1049 1130 IPR006086 GO:0004518
Rops8g01291 1744 MobiDBLite consensus disorder prediction 965 998 - -
Rops8g01291 1744 Pfam Ubiquitin binding region 229 254 IPR025527 -
Rops8g01291 1744 Pfam Ubiquitin binding region 359 385 IPR025527 -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1483 1507 - -
Rops8g01291 1744 SMART HhH_4 1117 1150 IPR008918 GO:0003677|GO:0003824
Rops8g01291 1744 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1720 1744 - -
Rops8g01291 1744 SUPERFAMILY PIN domain-like 2 1130 IPR029060 -
Rops8g01291 1744 FunFam DNA repair protein UVH3 1 148 - -
Rops8g01291 1744 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1115 1324 IPR036279 -
Rops8g01291 1744 CDD PIN_XPG_RAD2 2 92 - -
Rops8g01291 1744 CDD H3TH_XPG 1118 1262 - -
Rops8g01291 1744 Gene3D - 1115 1230 - -
Rops8g01291 1744 Gene3D - 1 149 - -
Rops8g01291 1744 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Rops8g01291 1744 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Rops8g01291 1744 Coils Coil 1002 1036 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1343 1359 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1362 1417 - -
Rops8g01291 1744 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Rops8g01291 1744 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Rops8g01291 1744 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1599 1614 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1333 1422 - -
Rops8g01291 1744 SMART xpgn3 1 98 IPR006085 GO:0004518
Rops8g01291 1744 ProSitePatterns XPG protein signature 2. 1049 1063 IPR019974 GO:0016788
Rops8g01291 1744 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1592 1614 - -
Rops8g01291 1744 CDD PIN_XPG_RAD2 1021 1116 - -
Rops8g01291 1744 SMART xpgineu 1046 1115 IPR006086 GO:0004518
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1675 1696 - -
Rops8g01291 1744 MobiDBLite consensus disorder prediction 128 145 - -
Rops8g01291 1744 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Rops8g01291 1744 MobiDBLite consensus disorder prediction 1444 1507 - -
Rops8g01291 1744 FunFam DNA repair protein UVH3 996 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01291 Rops-Chr8 28385984 28399831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01291 1040 1147 Core DNA Replication Machinery Family AT5G26680 36.937 3.33e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01291 K10846 - gmx:100820295 2440.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01291 8 28385984 28399831 Rops8g01291 8 28385984 28399831 ECH