Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01289 ATGGCAGGGAGGCATTGTTACAAGGACGTGGTTCCATTCACTGCAATGGTTGCAATAGAATGCTCCAACGTTGGTGTAACCGTTCTATTCAAAGCAGCTACTGAGAAGGGGTTGAGTTACTATGTTTTCGTCGCTTATTCATATGCAGTCTCCAGTCTTGTTCTCCTTTTGCCTCTGCCTTTCTTCTTCCGATGGTCAAGAGGGCTTCCTCCGTTGAACGTGTCTCTGATCTTCAGAATTTTTATCCTTGGAGTTATTGGAGTTGTAGCTCAGCTTTGTGGATATAAAGGACTTCAATACAGTTCACCCACTCTTGCTTCTGCTCTTGGCAACCTTATACCAGCTTTTACCTTCATACTGGCTGTCATTTTCAGGATGGAGAATTTAGCTTTAAGAAGCTCAAGCAGTCAGGCCAAGATCTTGGGTTCTACAGTATCAATATTAGGTGCACTCATAGTTGTTGTCTATAAAGGCCCAACAATATTTTCAGCTTCATCTCCACAATTATCACCTACTATTGATTCTGCAATGGGCTCTACATCACAAACAAATTGGGTTCTTGGTGGATCTCTTCTTATCATTGAGTTTCTTCTTACTCCAATCTGGTACATTGTTCAGACCAGTGTTATAAAACAATATCCAGCAGAGATTATTGTGGTCTTCTTATACAACCTGTGCGGGACATTCATATCTGTACCAGTATGCTTACTCGTTGAACCAAACTTGAGAGCTTGGAAGATAAATCCTGATATAACATTGATTGCCATTATATACTCGGGATTCTTTTGCACTGGGCTAAGTTCTCTAGTTCACACTTGGGGCCTTCATCTTAAAGGCCCTGTATATATATCACTCTTTAAGCCTTTGTCAATACCCATTGCTGCTGCTTTGAGTGCTATATTCCTCGGTGATGCACTGTATTTTGGGACTGTTTTAGGAGCAGTAATACTATCAATTGGGTTTTATGCTGTTATATGGGGGAAAGCAAAAGAAGAAGAATTGAGTGAGGACCTTGATAGAGGTAGAGCTTCTTTTCCATCGAATAGTAAGACTCCTTTGTTGGACAGATCCAACGTGGAAGATAACAGAGGAATCACCTATAACAGTTGCTGA 1113 0.4097 MAGRHCYKDVVPFTAMVAIECSNVGVTVLFKAATEKGLSYYVFVAYSYAVSSLVLLLPLPFFFRWSRGLPPLNVSLIFRIFILGVIGVVAQLCGYKGLQYSSPTLASALGNLIPAFTFILAVIFRMENLALRSSSSQAKILGSTVSILGALIVVVYKGPTIFSASSPQLSPTIDSAMGSTSQTNWVLGGSLLIIEFLLTPIWYIVQTSVIKQYPAEIIVVFLYNLCGTFISVPVCLLVEPNLRAWKINPDITLIAIIYSGFFCTGLSSLVHTWGLHLKGPVYISLFKPLSIPIAAALSAIFLGDALYFGTVLGAVILSIGFYAVIWGKAKEEELSEDLDRGRASFPSNSKTPLLDRSNVEDNRGITYNSC* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01289 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 330 - -
Rops8g01289 370 PANTHER WAT1-RELATED PROTEIN 9 337 IPR030184 GO:0016020|GO:0022857
Rops8g01289 370 Pfam EamA-like transporter family 26 154 IPR000620 GO:0016020
Rops8g01289 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01289 Rops-Chr8 28369222 28375471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01289 1 362 Nodulin-like Gene Family AT5G40240 55.769 2.77e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01289 - - gmx:100805667 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01289 8 28369222 28375471 Rops8g01289 8 28369222 28375471 ECH