Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01284 ATGATGGATTGCAAATTTGAGACAGCAGAAACTCGCAGGAACAAGTGTGCAGCATGCTTCAGGCAGTTCAACAAGCTGGAGCACCTCGTGGAGCATATGAGGATCTCATACCATTCGGTCCATGAACCAACCTGTGGAATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGGGAAATTTTTGCCAACCGAGGGTGCAGGTTTTGCTTGAAAGTCTTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAACTCTCTGGAATACAAGGAATAATTGGTCGCTTTTCAAACTTGGGCATTCGTGATAATTTGACTATTGGTGGGGGAGCAAGAGGACCACAAGTAGTGGCACTAGCTTGTAAAATGGTTGGAGGTGGCAGTGATGGTTCATTGGATCTCTGTGCAAGAGTTTGCCTAATTGATGAGCATGAGAACATCATCTTCCATTCTTACGTGAAGCCACCAATTCCAATCACAAATTATAGGTATGAGACAACAGGCATTAGACCAGAATACTTGAGGGATGCAATGCCAGTGAGACAAGTTCAGAAGAGGATTCAAGACTTCCTTTGCAATGGAGAACCTATGTGGACAATTCGAGCAAGAGGTGGAAGAGCAAGGATTCTTGTGGGTCATGGTTTAGATCATGATCTTGCATGTTTGCAAATGGAATATCGAGCAGAAAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACTAGCAAGCTGAGCAACTCTCTCAAGTACTTAACACAAGCATATCTTGGGTATGACATTCAAACCGGGATACAGGATCCTTATGAAGATTGTGTTGCAACAATGAGGCTCTACATGAGAATGAGATCCCAAGCACACAGAAAAGAGGATTACCCTGTGGCATCTGACCCTCAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTAGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCGTATATAATCCCTGA 1071 0.437 MMDCKFETAETRRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECREIFANRGCRFCLKVFDSPNSRRIHQEKCQLSGIQGIIGRFSNLGIRDNLTIGGGARGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIPITNYRYETTGIRPEYLRDAMPVRQVQKRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLACLQMEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQAHRKEDYPVASDPQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSVYNP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01284 356 SMART exoiiiendus 131 305 IPR013520 -
Rops8g01284 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 43 IPR013087 -
Rops8g01284 356 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 19 351 IPR047021 GO:0004527
Rops8g01284 356 CDD REX4_like 133 296 IPR037431 GO:0006364|GO:0008408
Rops8g01284 356 Pfam Exonuclease 151 295 IPR013520 -
Rops8g01284 356 Gene3D - 129 319 IPR036397 GO:0003676
Rops8g01284 356 SUPERFAMILY Ribonuclease H-like 145 300 IPR012337 -
Rops8g01284 356 FunFam RNA exonuclease 4 128 315 - -
Rops8g01284 356 ProSitePatterns Zinc finger C2H2 type domain signature. 16 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01284 Rops-Chr8 28184909 28187070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01284 6 353 C2H2 Transcription Factor Family AT3G27970 74.000 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01284 - - gmx:100813973 688.337