Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01279 ATGCTTCCACTACGATTCATCACTCATCCTCATCCTCATCCTCCATCATCTCCATTGCTGAGCAGCACCAACTCTTGTTCCTTCTGTCCTACGCCTCGCTCCCTATTTAACCCCGAAAACAATAACAGAAACAATAAACAGTGCCTTCTTCGCTCCAATGTCGGAAGTCTCAACCTTAGGGTTTTCGCAATGTCTGGTAACAACTCGTTCAAGATGAACCTCAATGAGTACCTCGTCACTCTCGAGAAGCCCCTTGGTATCCGATTCGCTCTCACCGCTGATGGAAAAATCATCGTCCATTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCTAGGATAATTATGGTGGGTGACACTTTGAAGAAAGCTGGTGATTCGTCTCTGAACACTCTCGTCGAGATTAAAGACGTGGGAGATACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCATTCAACTACTACATAAGACGAATGGTCTAGAAATAGTGTTTAATAGAGGTCGAGTTCCTATTGTCACATGGAATGAGACACTATTGGCATCAAATTTACAACCATCTAGTGAGAACAATGGGAATTCTGGATTTGTGATATTCAACTCAAAGTTTCTTAAATCAAAGGGAAGCAAGTTATTGAGCAATCAAAATAAAACTGCCATCACCCATGGTGAGAGAAATTTCTCTACTGAACCCACAACACAACTTGCTTGTGTTTTCACTGAAGAAGCATGTGGAGATGGAGACTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCCTTGGATCGTTCCAAGGATGAGATGTACTATAATCACTCCCTTGGTATGCGTTACAGCAAGATTACAGAACAAATATATGTTGGATCCTGTATACAAACAGAAGATGATGTGGAAACCTTGTCAAAAGTTGAGGGAATTACTGCTGTGCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGAGTCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGAAAGAAACTCCCATTTTGTGTAGGGCTTTTATTACGGTTGCTAAGGAAGAATCTCCGTGTTTTTGTTACTTGTACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACCTGGGTCACTGGGATGCACACTTGCAGGCCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATTGCTATGGTTGAAAGGGGCAAACATGATGGACCTCCCACACATGCCGTTACATTTGTGTGGAATGGTCATGAGGGAGAGGAAGTAAATTTGGTTGGAGACATTACTGGAAATTGGAAAGAACCACTCAGGGCAAAGCACCAGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATAGTTAATGGACAATGGAAGCATTCAACTGCTTCACCGGCAGAAAGGGATGAAAGTGGAAATGTCAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAGCAAAAAGATGCCAACGTTGTCAAGGTGATTGAAAGGCCTTTGAATGAAAAGGAACGGTTTATGTTGGCAAAAGCAGCTCGTTGTATCGCTTTCTCTGTCTGTCCTATCAGATTAGCTCCCAAATAG 1776 0.4274 MLPLRFITHPHPHPPSSPLLSSTNSCSFCPTPRSLFNPENNNRNNKQCLLRSNVGSLNLRVFAMSGNNSFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSLNTLVEIKDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKTNGLEIVFNRGRVPIVTWNETLLASNLQPSSENNGNSGFVIFNSKFLKSKGSKLLSNQNKTAITHGERNFSTEPTTQLACVFTEEACGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGITAVLNFQSGTEAENWGINVKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEGEEVNLVGDITGNWKEPLRAKHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDESGNVNNIIVIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSVCPIRLAPK* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01279 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Rops8g01279 591 Pfam Dual specificity phosphatase, catalytic domain 300 421 IPR000340 GO:0008138|GO:0016311
Rops8g01279 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Rops8g01279 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Rops8g01279 591 Gene3D Protein tyrosine phosphatase superfamily 284 551 IPR029021 -
Rops8g01279 591 SUPERFAMILY PDZ domain-like 56 165 IPR036034 GO:0005515
Rops8g01279 591 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g01279 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 59 589 - -
Rops8g01279 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 453 IPR020422 GO:0006470|GO:0008138
Rops8g01279 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Rops8g01279 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203
Rops8g01279 591 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515
Rops8g01279 591 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 284 451 - -
Rops8g01279 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 281 424 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01279 Rops-Chr8 28136787 28149880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01279 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 68.374 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01279 - - gmx:100814503 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01279 8 28136787 28149880 Rops8g01279 8 28136787 28149880 ECH