Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01275 ATGGACAAGAAACTGTGCAACTCGTCTCAAGATCCCGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATCGCCAATCATGGGGAAGGTGTCTGGAACTCCTTAGCCAAAGCTGCAGGTCTTAAACGTACCGGAAAAAGTTGCCGGCTCCGGTGGCTGAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCATCTACCAGGAAGAACTGATAATGAGATCAAGAACTACTGGAGGACTAGAATCCAGAAGCAGATCAAACAAGCTGAGAACTTCCAGCAACAGAGTTCTGAAATAAATGATCATCAAGCAAGCACTAGCCAAATGTCCACCATGGCTGAGCCCATGGAGACCTACTCTCCATCCTCTTTCGACTGGAGCATGGAAGATATCTGGTCAATGCAATTACTAAATGGGGATTAA 519 0.4586 MDKKLCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKQIKQAENFQQQSSEINDHQASTSQMSTMAEPMETYSPSSFDWSMEDIWSMQLLNGD* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01275 172 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Rops8g01275 172 FunFam Myb-related protein 305 73 141 - -
Rops8g01275 172 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Rops8g01275 172 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Rops8g01275 172 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Rops8g01275 172 CDD SANT 73 112 IPR001005 -
Rops8g01275 172 SMART sant 68 116 IPR001005 -
Rops8g01275 172 SMART sant 15 65 IPR001005 -
Rops8g01275 172 FunFam Myb transcription factor 16 68 - -
Rops8g01275 172 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 147 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops8g01275 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Rops8g01275 172 Gene3D - 16 68 - -
Rops8g01275 172 CDD SANT 18 63 IPR001005 -
Rops8g01275 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Rops8g01275 172 Gene3D - 73 144 - -
Rops8g01275 172 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01275 Rops-Chr8 27996552 28000317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01275 10 172 MYB Transcription Factor Family AT3G01530 59.890 2.24e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g01275 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01275 K09422 - gmx:778046 320.857