Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01272 ATGCAGAAGGACTCATGGAACGAAGAGGAGGACAAGATACTGATTGAAGCTCACAAGGAAGTTGGGAACAAGTGGGCAGAGATTGCAAGGAGATTGCCTGGCCGAACTGAGAACACCATCAAGAACCATTGGAACGCCACCAAGAGGCGCCAGAATGCTAAGAAGCAGAAGAAGCGCCCCGCTGATGCTAAGGGGACACTGCTTCAGAACTACATCAGGGAAGTCACTGCTGCTGAAGAAGCTGAAAAGGAGCTGAAGAAATCCATGAGCAAGAAAGAGGATCCTAGCAATGATGTTGGTGGTGGTATCCTCCGAGTTCGGTATGAGAGCTCAGAGGGTGACTTCAGCTCTGAAGATTGGGCTACTCATGATGATGTTGGTTGGAGTGTGCAGCAACATGTGCCAGTGATGCTCAATGGTGGTGATGACATGGCAAGTGTGTCTGCTATGGATGGTAACTCAATGGATTATGAGATTCCAATGAAGAAGGAAATGGATCTCCTGGAGATGATCTATAGAAACCCTTAA 528 0.4792 MQKDSWNEEEDKILIEAHKEVGNKWAEIARRLPGRTENTIKNHWNATKRRQNAKKQKKRPADAKGTLLQNYIREVTAAEEAEKELKKSMSKKEDPSNDVGGGILRVRYESSEGDFSSEDWATHDDVGWSVQQHVPVMLNGGDDMASVSAMDGNSMDYEIPMKKEMDLLEMIYRNP* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01272 175 MobiDBLite consensus disorder prediction 81 102 - -
Rops8g01272 175 CDD SANT 5 48 IPR001005 -
Rops8g01272 175 FunFam Transcription factor MYB119 4 67 - -
Rops8g01272 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Rops8g01272 175 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Rops8g01272 175 Coils Coil 68 88 - -
Rops8g01272 175 ProSiteProfiles Myb-like domain profile. 1 48 IPR001005 -
Rops8g01272 175 PANTHER MYB PROTEIN-RELATED 2 69 - -
Rops8g01272 175 SMART sant 2 50 IPR001005 -
Rops8g01272 175 MobiDBLite consensus disorder prediction 46 66 - -
Rops8g01272 175 SUPERFAMILY Homeodomain-like 3 54 IPR009057 -
Rops8g01272 175 Gene3D - 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01272 Rops-Chr8 27839284 27839811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01272 1 75 MYB Transcription Factor Family AT4G18770 64.000 2.66e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g01272 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01272 K09422 - gmx:100805329 170.244