Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01268 ATGAACTCCAGAAACATGTCAAATGTTAGCTACAACATGAAGAACCCATCATGGATTCTCTTCACCACAATTCTCCTTTCATCTTTGTCTAACTCACTCTCTGATCCAAGAATCTCAGAAGCTGAACTCAACTGTGGCACAGCCAAAGCCCCACTTAAAGCCAATTACATCCCAAGTTTCATCAAAGAAATGGAGAGCCTCTCTCAATTGGTGACAAACCACAACTGGGGAACTCACTCTGTCAACATCTCAGGATCCATTCCCATCTTTGGCTTTGCACAATGCTTCAATGACCTCTCTCATACTGATTGCCTTCTCTGCTATGCTGCAAGTCGCACCAAGCTCCCTCGTTGCCTCCCTTCTCTCTCTGCTCGCATCTACCTTGATGGATGCTTCCTTCGCTATGACAACTACAGCTTCTACTCAGAGAGCACTGACCCTTTGAGGGATACCCTTAACTGCACATCACAGCATGGTGTGGCTGTTGGTGAAGCTGAGAGGTTGGAGCTGGAGAAGAGTGTTGGCAGAGTGGTTGATGTTGTGGCTATGGATGCTGTTGCCAAGGGAGGTGGGTTTGCTGTGGGAGAAGTTGAGGGTGTTTATGCCTTGGCACAGTGTTGGAACACTGTTGTGAGTGATGGGTGCAGAGATTGCTTGAGGAAAGCTGGGAAGGAGGTAAGAGGGTGCTTGCCAAAGAAGGAAGGGAGGGCCTTGAATGCTGGGTGTTATTTGAGATATTCAACAGAGAAGTTCTACAATGAAGAAAGTGCAGCAGATGGTGGAGATGGGTCTTTTAGAAAAGGAGCTATAATAGCAGCAGTGTTAGCAGCAGCTGCAGTTATAATGCTTGGTCTCTCTGCCTCTTATGCAGCCTTCACAAAATTGTCAAAGATAAAGAAAGGAAACAATAATCCCGGTCAGATTTCCTCTTCCATAAGCAAATCTAGCTTGAATTACAAATACGAAACTCTTGAGAAGGCCACAGATTATTTCAGCTCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGTTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAAGTTGTTGCTGTTAAGAGATTGGTCTTCAATAACAGGCAATGGGTGGATGAGTTCTTTAATGAAGTTAATTTGATTAGCGGAATGGAACACAAGAACCTTGTCAAACTATTAGGTTGTAGCATTGAAGGCCCTGAGAGCCTTCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGATCAATTTATCTTTGAAAAGAACAGATCTCATATTCTAAACTGGAAGCAGCGGTTTAATATCATACTTGGAATAGCAGAAGGGCTCGCATATCTTCATGAAGGCTCTAAAATAAGAATCATCCATAGAGACATCAAAAGCAGCAATGTTCTTCTGGACGAGAATCTCACTCCTAAGATTGCTGATTTTGGCCTTGCCAGGTGTTTTGCTGCTGATAAGACACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTAGAGGACAACTTACAGATAAAGCTGATGTCTATAGTTTTGGAGTACTTGTTCTGGAGGTTGTATGTGGCAGGAGGAATAATGTCTTCAGAGAGGACTCTGGCTCGCTTCTACAAACTGTTTGGAAACTTTGCCGATCAAACACATTGGTTGAGGCTGTTGATCCTTGCTTGGGAGATGATTTTCCAGCAACTGAAGCATCAAGGATGTTTAACATTGGATTGCTTTGCACACAAGCTTCTGCTTCCCTGAGGCCATCCATGACCCAAGTTGTTTACATGTTAAGTAATTCAAATGTGGATATTCCTACACCAAATCAACCCCCATTTTTGAACACTGGAATGCTAGACTCAGACAGCTCCATTAGGTCTTATAGCACAAACAGCTTTGTATCCAATGCCTTAAAGAAGATTGGAGTGTCCCACAGCTACTCAGAGTCCTCTAGTTCACACAACTCAGATGAGCCATCAACAAGTGAAGAACCAATTATCCAAGCTTGA 2013 0.4332 MNSRNMSNVSYNMKNPSWILFTTILLSSLSNSLSDPRISEAELNCGTAKAPLKANYIPSFIKEMESLSQLVTNHNWGTHSVNISGSIPIFGFAQCFNDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSESTDPLRDTLNCTSQHGVAVGEAERLELEKSVGRVVDVVAMDAVAKGGGFAVGEVEGVYALAQCWNTVVSDGCRDCLRKAGKEVRGCLPKKEGRALNAGCYLRYSTEKFYNEESAADGGDGSFRKGAIIAAVLAAAAVIMLGLSASYAAFTKLSKIKKGNNNPGQISSSISKSSLNYKYETLEKATDYFSSSRKIGQGGAGSVFKGILPNGKVVAVKRLVFNNRQWVDEFFNEVNLISGMEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRSHILNWKQRFNIILGIAEGLAYLHEGSKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEVVCGRRNNVFREDSGSLLQTVWKLCRSNTLVEAVDPCLGDDFPATEASRMFNIGLLCTQASASLRPSMTQVVYMLSNSNVDIPTPNQPPFLNTGMLDSDSSIRSYSTNSFVSNALKKIGVSHSYSESSSSHNSDEPSTSEEPIIQA* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01268 670 Pfam Protein kinase domain 332 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01268 670 Gene3D - 40 140 IPR038408 -
Rops8g01268 670 Gene3D - 164 251 IPR038408 -
Rops8g01268 670 FunFam Cysteine-rich receptor-like protein kinase 2 38 140 - -
Rops8g01268 670 CDD STKc_IRAK 337 599 - -
Rops8g01268 670 Gene3D Transferase(Phosphotransferase) domain 1 407 608 - -
Rops8g01268 670 MobiDBLite consensus disorder prediction 647 670 - -
Rops8g01268 670 Pfam Salt stress response/antifungal 192 248 IPR002902 -
Rops8g01268 670 Pfam Salt stress response/antifungal 81 138 IPR002902 -
Rops8g01268 670 ProSiteProfiles Protein kinase domain profile. 331 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01268 670 Gene3D Phosphorylase Kinase; domain 1 291 406 - -
Rops8g01268 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Rops8g01268 670 ProSiteProfiles Gnk2-homologous domain profile. 149 251 IPR002902 -
Rops8g01268 670 SMART serkin_6 331 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01268 670 FunFam Cysteine-rich receptor-like protein kinase 2 296 406 - -
Rops8g01268 670 FunFam Cysteine-rich receptor-like protein kinase 2 407 607 - -
Rops8g01268 670 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 648 - -
Rops8g01268 670 FunFam Cysteine-rich receptor-like protein kinase 3 153 251 - -
Rops8g01268 670 ProSiteProfiles Gnk2-homologous domain profile. 38 140 IPR002902 -
Rops8g01268 670 SUPERFAMILY Protein kinase-like (PK-like) 314 630 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01268 Rops-Chr8 27770981 27775071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01268 19 496 Receptor kinase-like Gene Family AT5G40380 56.289 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops8g01268 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01268 - - gmx:100790404 1053.12